Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g0951 ATGTCTCAGACTAACTGGGAAGCTGATAAGATGTTAGATGTCTACATCCATGATTACCTGGTGAAGAGGGATTTGAAGGCTTCTGCACAGGCCTTTCAAGCTGAGGGGAAAGTGTCCTCTGACCCTGTTGCTATTGATGCCCCAGGAGGATTTCTGTTTGAGTGGTGGTCGGTTTTCTGGGACATATTTATTGCCAGGACTAACGAGAAGCACTCAGAGGTTGCAGCCTCATATATTGAGACACAAATGAACAAGACAAGGGAGCAACAGCAGCAGCAGCAACAACAGCAACAGCAGCAGCCACAACCGCAGCAGCCACAGCATCAACAGCAGCAGCAGCAACACATGCAGATGCAACAGCTCATGTTGCAGAGGCATGCACAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAGCAACAGCAACAACAGCAACAGCAGCAGCCACCACAGCCACAACCGCAGCAGCAGCAGCCACCACCACAACAACAGCAAAGTAGGGATAGGGCTCATCTCTTAAATGGCAGTACAAATGGGTTAGCTGGGAACCCTGGAACTGCAAATGCACTAGCAACAAGGATGTATGAGGAAAGGTTAAAGAGAGAATCTTTGGACGATGCAGCAATTAAGCAAAGATTTGGTGAGAACATGGGTCAACAACTTTTGGACCCAAATCATGCCTCAATATTGAAGTCAGCTGCAGCCACTGGCCAGCCTTCAGGGCAAGTTTTGCATGGTGCTGCTGGTGGGATGTCTCCTCAAGTTCAAGCTCGGAATCAGCAATTACCAGTGTCTACTCCGGATATAAAGAGTGAGATTAACCCCGTTTTAAATCCTAGAGCTGCGGGTCCTGAAGGATCATTGATGGGAATTCCTGGATCAAATCAAGGTGGTAACAACTTGACTCTAAAGGGTTGGCCACTCACAGGTTTTGAGCAACTGCGCTCTGGTCTACTCCAGCAACAAAAACCTTTCATGCAGGCTCCTCAGCCTTTTCATCAACTTCAAATGTTGACACCACAGCATCAGCAACAGATCATGCTTGCACAACAAAATTTGGCATCTCCTGCCAGTGATGAGAGAAGATTCAGAATGCTATTGAATAATAAGATTCAAAATCCTGTTGGTGATGTAGTATCTAATGTTGGATCTCCTCTTCAAGCTGGTGCCCCTACTTTTTCTCGTGGAGATACAGATATGCTAATGAAGATGAAACTGGCACAATCGATACAACAGCAGCAAAATCAGCAACAGCCAAACACCAATCCACAACAGCAGCAGCTTCAACAGCATGCTCTTTCGAATCAGCAGTCTCAGAATTCAAATCATAACATGCATCAGCAAGATAAAGTAGGGGGAGGTGGTGGCAGTGTCACTGTGGATGGTAGCATGTCTAACTCCTTTAGAGGAAATGATCAGGTTTCAAAAAACCAGATTGGAAGAAAGAGAAAGCAGCCCGTATCTTCTTCAGGTCCTGCCAATAGTTCAGGAACTGCAAATACAACAGGTCCATCACCAAGTTCAGCACCCTCAACTCCCTCAACTCATACGCCTGGAGATGTGATGTCAATGCCTGCTTTGCCTCATAGTGGTAATTCTTCAAAGCCGCTAATGATGTTTGGCGATGGCAGTGCAGCTCTTGCATCACCTTCAAACCAGTTGGCTGATGTGGATCGCTTTGTTGAGGATGGATCTCTTGATGATAATGTTGAGTCTTTTTTATCCCATGATGATACAGATCCCAGAGATACTGTTGGTCGATGTATGGATGTAAGCAAAGGCTTCACCTTTTCTGATGTAAATTCTGTACGTGCTAGCACAAGCAAAGTTGTATGCTGTCATTTCTCATCTGATGGGAAATTGCTTGCAAGTGGTGGGCATGACAAAAAGGCTGTATTATGGCACACGGATACTCTAAAGCAGAAGGCTACTCTTGAAGAACATTCATCTATGATCACTGATGTTCGTTTCAGTCCAAGCATGCCTCGCCTGGCAACGTCTTCATTTGACAAAACTGTCAGGGTTTGGGATATTGACAATCCTGGGTATTCGCTTCGCACCTTTACAGGACATTCTTCAACTGTAATGTCATTAGATTTTCACCCAAATAAAGATGACCTTATCTGCTCTTGTGATGGTGATGGAGAGATACGATATTGGAGCATAAATAATGGAAGTTGTGCCAGAGTCTCCAAGGGTGGCACCGCGCAGATGAGATTCCAACCTCGCCTAGGGAGGTACCTTGCGGCTGCTGCAGAGAATGTTGTGTCCATACTTGATGTGGAGACACAAGTATGCCGATATTCATTAAAGGGACACACGAAGCCAATTCATTCGGTGTGTTGGGATCCTTCTGGGGAGTTGCTGGCATCTGTGAGTGAGGACTCTGTCAGGGTTTGGACTCTGGGAACTGGGAGTGAAGGGGAATGTGTACATGAGCTTAGCTGCAATGGCAATAAGTTCCAGTCATGCGTTTTCCACCCAACGTACTCTTCTACATTGCTGGTCATTGGCTGTTACCAGGCAAGTCTACTTTCCTTATATCTTTCTTTCCTTCTTTCTTTCTTCCCAATTTCCTTCCCTTTTGATATTGGTGAATTTGGTTTTGGTTACCATTCTTGCTTCGAATCGAATTTAGAAACATGGGTTTCTTTGATCACAAAGCAGTGTTCACTGACCTTATAG 2682 0.4564 MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSEVAASYIETQMNKTREQQQQQQQQQQQQPQPQQPQHQQQQQQHMQMQQLMLQRHAQQQQQQQQQQQQQQQQQQQQPPQPQPQQQQPPPQQQQSRDRAHLLNGSTNGLAGNPGTANALATRMYEERLKRESLDDAAIKQRFGENMGQQLLDPNHASILKSAAATGQPSGQVLHGAAGGMSPQVQARNQQLPVSTPDIKSEINPVLNPRAAGPEGSLMGIPGSNQGGNNLTLKGWPLTGFEQLRSGLLQQQKPFMQAPQPFHQLQMLTPQHQQQIMLAQQNLASPASDERRFRMLLNNKIQNPVGDVVSNVGSPLQAGAPTFSRGDTDMLMKMKLAQSIQQQQNQQQPNTNPQQQQLQQHALSNQQSQNSNHNMHQQDKVGGGGGSVTVDGSMSNSFRGNDQVSKNQIGRKRKQPVSSSGPANSSGTANTTGPSPSSAPSTPSTHTPGDVMSMPALPHSGNSSKPLMMFGDGSAALASPSNQLADVDRFVEDGSLDDNVESFLSHDDTDPRDTVGRCMDVSKGFTFSDVNSVRASTSKVVCCHFSSDGKLLASGGHDKKAVLWHTDTLKQKATLEEHSSMITDVRFSPSMPRLATSSFDKTVRVWDIDNPGYSLRTFTGHSSTVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCARVSKGGTAQMRFQPRLGRYLAAAAENVVSILDVETQVCRYSLKGHTKPIHSVCWDPSGELLASVSEDSVRVWTLGTGSEGECVHELSCNGNKFQSCVFHPTYSSTLLVIGCYQASLLSLYLSFLLSFFPISFPFDIGEFGFGYHSCFESNLETWVSLITKQCSLTL* 894
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g0951 893 ProSiteProfiles Trp-Asp (WD) repeats profile. 687 729 IPR001680 GO:0005515
Dod09g0951 893 SMART WD40_4 680 720 IPR001680 GO:0005515
Dod09g0951 893 SMART WD40_4 595 634 IPR001680 GO:0005515
Dod09g0951 893 SMART WD40_4 806 848 IPR001680 GO:0005515
Dod09g0951 893 SMART WD40_4 762 800 IPR001680 GO:0005515
Dod09g0951 893 SMART WD40_4 637 676 IPR001680 GO:0005515
Dod09g0951 893 Gene3D - 568 739 IPR015943 GO:0005515
Dod09g0951 893 MobiDBLite consensus disorder prediction 406 447 - -
Dod09g0951 893 MobiDBLite consensus disorder prediction 85 167 - -
Dod09g0951 893 ProSitePatterns Trp-Asp (WD) repeats signature. 663 677 IPR019775 -
Dod09g0951 893 PANTHER TRANSCRIPTIONAL COREPRESSOR LEUNIG-LIKE PROTEIN 1 841 - -
Dod09g0951 893 MobiDBLite consensus disorder prediction 233 260 - -
Dod09g0951 893 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 644 679 - -
Dod09g0951 893 Pfam WD domain, G-beta repeat 683 720 IPR001680 GO:0005515
Dod09g0951 893 Pfam WD domain, G-beta repeat 604 633 IPR001680 GO:0005515
Dod09g0951 893 Pfam WD domain, G-beta repeat 641 676 IPR001680 GO:0005515
Dod09g0951 893 Pfam WD domain, G-beta repeat 765 799 IPR001680 GO:0005515
Dod09g0951 893 MobiDBLite consensus disorder prediction 406 537 - -
Dod09g0951 893 Pfam LisH 10 36 IPR006594 GO:0005515
Dod09g0951 893 CDD WD40 602 838 - -
Dod09g0951 893 Gene3D - 740 847 IPR015943 GO:0005515
Dod09g0951 893 SMART Lish 8 40 IPR006594 GO:0005515
Dod09g0951 893 MobiDBLite consensus disorder prediction 458 518 - -
Dod09g0951 893 SUPERFAMILY WD40 repeat-like 600 841 IPR036322 GO:0005515
Dod09g0951 893 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 1 841 IPR044716 GO:0003714
Dod09g0951 893 Coils Coil 118 147 - -
Dod09g0951 893 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Dod09g0951 893 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 687 725 - -
Dod09g0951 893 ProSiteProfiles Trp-Asp (WD) repeats profile. 644 679 IPR001680 GO:0005515
Dod09g0951 893 ProSiteProfiles Trp-Asp (WD) repeats profile. 769 809 IPR001680 GO:0005515
Dod09g0951 893 MobiDBLite consensus disorder prediction 85 150 - -
Dod09g0951 893 ProSiteProfiles Trp-Asp (WD) repeats profile. 602 643 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g0951 Dod-Chr9 29460635 29469977 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod09g0951 647 827 Miscellaneous Gene Families AT5G08390 27.807 1.61e-14 76.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Dod09g0951 WD40 3.8e-05 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g0951 - - gmx:100816263 1109.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod08g1650 08 38934941 38937672 Dod09g0951 09 29460635 29469977 PCT