Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g0899 ATGGAGCTTCAGCTAGGCCTGGCTCTCCCCACTCATGATCACATAGAAGGATTGAAGGTTAGAAACCTAGGATTCACAAAGTCAAAACAGGTGGTGGAGAGCTCAGAATTGTGGAGACCCAGTTACACTAATAGTGAAAGCAAAAAGCACGTCAATAACAATAAGCGTAGCTTTGAAGAGTCCTTTGGGCATTCTTTGAAACCTTTGCCTTTGCTAGTATGGAGTGGACAGCCAAATGAGGAAGATGACCGCAGTGCAAAGATGCCTAGAAACATGCACAATTCAAACAAGAATGAAGAAGAAAACCGTTTGGTGGGGTGGCCACCAATCAAATCATGGAGAAAGAGAGAACTCCATCATGATCAGCAGCATCCTGCAGGAGGCCAAAGAGAGAACAATAGGATATTGCAAGCTGATGAGAATCAAACTAGAGGGCCAAACTCTTTGTATGTCAAGGTTAACATGGAAGGGGTGACAGTAGGGAGGAAGATTAATTTGAGGCTTTACGACTCTTACCAAACTCTTACAAACACGTTGATTAGTATGTTTGCTAAACACCAAAATTTTGAGGAAGATGGAGCAACTTATACACTCACCTTTCAAAACGAACAAGGGGATTGGCTGCTTGCTGGACATGTTCCATGGCAGTATGTACATATTATATATATATACACGCACTTTAATATCATCGACGACTTTATGCCACAGAAATTTGAGGGCAGTTAA 726 0.4201 MELQLGLALPTHDHIEGLKVRNLGFTKSKQVVESSELWRPSYTNSESKKHVNNNKRSFEESFGHSLKPLPLLVWSGQPNEEDDRSAKMPRNMHNSNKNEEENRLVGWPPIKSWRKRELHHDQQHPAGGQRENNRILQADENQTRGPNSLYVKVNMEGVTVGRKINLRLYDSYQTLTNTLISMFAKHQNFEEDGATYTLTFQNEQGDWLLAGHVPWQYVHIIYIYTHFNIIDDFMPQKFEGS* 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g0899 241 Gene3D - 144 231 - -
Dod09g0899 241 Pfam AUX/IAA family 2 216 IPR033389 -
Dod09g0899 241 ProSiteProfiles PB1 domain profile. 148 237 IPR000270 GO:0005515
Dod09g0899 241 SUPERFAMILY CAD & PB1 domains 143 219 - -
Dod09g0899 241 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 1 217 IPR003311 GO:0005634|GO:0006355
Dod09g0899 241 MobiDBLite consensus disorder prediction 76 105 - -
Dod09g0899 241 MobiDBLite consensus disorder prediction 80 100 - -
Dod09g0899 241 PANTHER AUXIN-RESPONSIVE PROTEIN IAA29 1 217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g0899 Dod-Chr9 28709354 28710443 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod09g0899 151 225 B3 DNA Binding Superfamily AT3G61830 35.000 7.06e-08 50.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Dod09g0899 AUX_IAA 9.2e-31 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g0899 K14484 - gmx:100802759 295.434