Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g0889 ATGGATATGCTTCTTTCCATGATCATGGTCGCTTATTATATACTTGTTTCCTCTCTCACAGCTTCGATGGCAGTTGACTCCATTGGTGTCTCCCAGTCCCTCAGTAATGACATGACCTTATTGTCCCAAGGTGGAATGTTTGAACTTGGTTTCTTCAGCCCTGGTAATTCCACAAAACGTTACCTGGGGATTTGGTACAAGGAAGTGCCCATGTATGCAGTTGTTTGGGTTGCAAACAGGGACAACCCTATCAATGATACCTCAGGAGTATTAACAATTGACACCTTTGGCAATCTAATCCTCACCCAGAACAACTCTGTTGTTTGGCAAACAACCTCTCAGAAACAAGCACAGAGTCCAGTGGCACAGCTCATGGACAGTGGCAATCTTGTGGTTAGAAACGAGGGAGATGCAAACTCGGAAGACTTCTTGTGGCAAAGCTTTGATTATCCATCTGATACAGTATTGCCGGGGATGAAGATGGGGTGGGACCTCAGACTTAATCTGGAATGGCGAATAACATCTTGGAAGAGTCCAAATGATCCATCTCCTGGAGACCTTTCTTGGGGTTTAGCACTCAATAGTTACCCAGATTTTTACTTGAAGGGGAAAAGAACAGTGTACCGGTTAGGACCATGGAATGGGATTTATTTCAGTGGCTCACCAGATATTAATGCTAGCCCATATTATGAATTCAGGTATGTCACTAGTAATAATGCCAAGTATTCCTCTAATAAGGATGAGATGTACTACACCTTTACTGTCAAGAATAGTTCTTCTGTGTCCAGAATGGTAGTAAACCAAACAACTGGATTTCTCAAGCATCTTTTGTGGGTGGAAGGGGATCAATTATGGACGGTTTATGCGACATACTTTCGAGACCAATGCGACGCCTATGGCACTTGTGGAGTATACGGGAACTGCTATATAGAAGATTCGCCAGTGTGCCGGTGTTTAGAAGGGTTCAGTCCGAAATCACCACGAGCATGGGACATGAAGAATTGGACTGAAGGATGTGTCCGGGATAAACCGTTAAGCTGCAACGACACTTTTGTCAAATTTGCAGGCTTGAAAGTTCCAGATACTACACATACAATATTGGATGAGGATATGAGTCTAGAGGAATGCAAAGTTAGGTGCTTGAATAACTGCTCTTGTATGGCCTATAGTAATTCAGATATAAGAGGAGCAGGTAGCGGGTGTGTCCTGTGGTTTGGTGATCTGATTGATATGAGACAGTTTGACACTGCAAAACTTGAAACTCGTTGGCAAGATCTATATGTCCGTATGGCTGCTTCAGAATCAGGTGAAAACTCCAACCATGTAGAGGGCAAGAACAACACAAGAACAATAGTTGCTGTAACTGTTCCAGCAATTTGTGGGACGCTTTTCCTTTGCATTTATTTGTTCTGCAGAGCCCGGAGGAATATTGTTGAGAAGTCGATCACTAAAGATGACATTGAAGGACATGTCGAGGATCTAGATCTCCCGTTATTTAATCTGCTAACAATTACTACAGCCACTAACAACTTTTCGGCGGAGAATAAGATTGGACAAGGGGGTTTTGGAGCTGTGTATAAGGGAAAAGTCAATGGGCAAGAAACTGCTGTAAAGAGACTTTCAAGGAGCTCTGGACAAGGAATGATTGAGTTCATAAATGAAGTAAAACTGATTGCTAAACTTCAGCACAGAAATCTTGTAAGGCTTCTTGGTTGTTGCATTCAAGGAGGAGAAAAGTTGCTAATTTATGAATACATGGCTAATGGTAGCTTAGACTCCTTCATTTTTGGTATGGAATATCCATAA 1806 0.4236 MDMLLSMIMVAYYILVSSLTASMAVDSIGVSQSLSNDMTLLSQGGMFELGFFSPGNSTKRYLGIWYKEVPMYAVVWVANRDNPINDTSGVLTIDTFGNLILTQNNSVVWQTTSQKQAQSPVAQLMDSGNLVVRNEGDANSEDFLWQSFDYPSDTVLPGMKMGWDLRLNLEWRITSWKSPNDPSPGDLSWGLALNSYPDFYLKGKRTVYRLGPWNGIYFSGSPDINASPYYEFRYVTSNNAKYSSNKDEMYYTFTVKNSSSVSRMVVNQTTGFLKHLLWVEGDQLWTVYATYFRDQCDAYGTCGVYGNCYIEDSPVCRCLEGFSPKSPRAWDMKNWTEGCVRDKPLSCNDTFVKFAGLKVPDTTHTILDEDMSLEECKVRCLNNCSCMAYSNSDIRGAGSGCVLWFGDLIDMRQFDTAKLETRWQDLYVRMAASESGENSNHVEGKNNTRTIVAVTVPAICGTLFLCIYLFCRARRNIVEKSITKDDIEGHVEDLDLPLFNLLTITTATNNFSAENKIGQGGFGAVYKGKVNGQETAVKRLSRSSGQGMIEFINEVKLIAKLQHRNLVRLLGCCIQGGEKLLIYEYMANGSLDSFIFGMEYP* 602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g0889 601 PANTHER - 13 597 - -
Dod09g0889 601 SUPERFAMILY alpha-D-mannose-specific plant lectins 74 182 IPR036426 -
Dod09g0889 601 CDD PAN_AP_plant 344 431 - -
Dod09g0889 601 Pfam PAN-like domain 348 411 IPR003609 -
Dod09g0889 601 CDD B_lectin 31 151 IPR001480 -
Dod09g0889 601 PANTHER S-LOCUS GLYCOPROTEIN DOMAIN, PAN/APPLE DOMAIN PROTEIN-RELATED 13 597 - -
Dod09g0889 601 ProSitePatterns Protein kinases ATP-binding region signature. 517 538 IPR017441 GO:0005524
Dod09g0889 601 Pfam S-locus glycoprotein domain 208 326 IPR000858 GO:0048544
Dod09g0889 601 Gene3D Phosphorylase Kinase; domain 1 473 585 - -
Dod09g0889 601 Gene3D - 20 148 IPR036426 -
Dod09g0889 601 SMART ntp_6 346 430 IPR003609 -
Dod09g0889 601 Pfam D-mannose binding lectin 74 177 IPR001480 -
Dod09g0889 601 ProSiteProfiles PAN/Apple domain profile. 347 431 IPR003609 -
Dod09g0889 601 SUPERFAMILY Protein kinase-like (PK-like) 492 599 IPR011009 -
Dod09g0889 601 Pfam Protein tyrosine and serine/threonine kinase 513 595 IPR001245 GO:0004672|GO:0006468
Dod09g0889 601 ProSiteProfiles Bulb-type lectin domain profile. 25 145 IPR001480 -
Dod09g0889 601 ProSiteProfiles Protein kinase domain profile. 511 601 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dod09g0889 601 SMART blect_4 31 151 IPR001480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g0889 Dod-Chr9 28582083 28584286 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod09g0889 370 599 Receptor kinase-like Gene Family AT4G21410 37.652 8.92e-38 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Dod09g0889 S_locus_glycop 1.4e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g0889 - - gmx:100812007 733.406
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod09g0889 09 28582083 28584286 Dod09g0889 09 28582083 28584286 ECH