Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g0850 ATGGAAGATGAGAGCAATAGCAATCTGCCAAATGGGCTCATCACAGGAAGCCCTGAAAGCCCTTGCTTAAAGACAAGCAGCAACAACAACAACAACAAAGAACAAGATCGCTTTCTCCCTATAGCCAATGTGGGTAGAATCATGAAAAAGGCCATCCCTTCCAATGGGAAGATCTCAAAGGATGCAAAAGAGACAGTTCAAGAATGTGTGTCTGAGTTCATTAGCTTTGTCACTGGGGAAGCCTCTGACAAGTGCCAAAGAGAAAAAAGGAAGACCATCAATGGGGATGACATCATATGGGCCATCACAACCTTAGGTTTTGAGGACTATGTTGACCCTTTAAAATCCTATCTCCAGAAATATAGAGAGATAGAAGGAGAGAAGCTTAACATTCCAAAGCAACAACGTTCTGAACAAAGGCTACTACATCAACAACAACAGCAACATCACCTCAATGACCAAAGTAATAATATACCTTTGAGTAGTGTATATCCTTCAACAAATCTCATTTCTCATCATCAGCCTCCCTATGTGGCCACGGATCAGCTATTTTCCTTACCATTCTCCCCAAATTCAATTCAGAAACAGCTTACACCCGCAAGATCAGATCGATTCATTAGGGCAATGGTAAGATTAATTAACACGGATGGTAACTATGTTGGGGCCAAATTTTTCATTTTCCACACCATATGGTAA 696 0.4109 MEDESNSNLPNGLITGSPESPCLKTSSNNNNNKEQDRFLPIANVGRIMKKAIPSNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDIIWAITTLGFEDYVDPLKSYLQKYREIEGEKLNIPKQQRSEQRLLHQQQQQHHLNDQSNNIPLSSVYPSTNLISHHQPPYVATDQLFSLPFSPNSIQKQLTPARSDRFIRAMVRLINTDGNYVGAKFFIFHTIW* 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g0850 231 Gene3D Histone, subunit A 25 158 IPR009072 GO:0046982
Dod09g0850 231 PRINTS CCAAT-binding transcription factor subunit A signature 85 103 - -
Dod09g0850 231 PRINTS CCAAT-binding transcription factor subunit A signature 104 122 - -
Dod09g0850 231 PRINTS CCAAT-binding transcription factor subunit A signature 66 84 - -
Dod09g0850 231 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 197 IPR027113 GO:0001228|GO:0006355|GO:0016602
Dod09g0850 231 MobiDBLite consensus disorder prediction 1 36 - -
Dod09g0850 231 ProSitePatterns NF-YB/HAP3 subunit signature. 69 85 IPR003956 GO:0005634|GO:0006355|GO:0043565
Dod09g0850 231 SUPERFAMILY Histone-fold 35 148 IPR009072 GO:0046982
Dod09g0850 231 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-7 1 197 - -
Dod09g0850 231 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 38 102 IPR003958 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g0850 Dod-Chr9 26964704 26965399 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod09g0850 12 209 CCAAT-HAP3 Transcription Factor Family AT2G13570 65.049 2.79e-72 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Dod09g0850 CBFD_NFYB_HMF 9.7e-28 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g0850 K08065 - gmx:100778216 288.5