Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g0846 ATGAACAAGGGTAGCCGGAAGCGCCCACCGCCACCGTCGAAGCCCTCTCCAGCGACCGCCCAGCCGAAGACCCAGGCCCTGTCGCAGGAAGACGAGTTCGTCGACGAGGACGTGTTCCTCGACGAAACCCTCATTTCCGAGGACGAAGAGTCCCTCATCCTCCGCGACATCGAGCAGCGCCATGCCCTCGCCGCTCGCCTTGCCAAGTGGACCCGCCCTCCTCTCTCCCCAGACTACCTCTCTCAATCTCGCAGCGTCCTTTTTCAGCAGCTGGAGATTGATTATGTGATCGGAGAGAGCCACAAAGAGTTGCTGCCGAATTCATCTGGACCCGCTGCCATTATCAGAATATTCGGAGTCACGAAGGAAGGGCACAGTGTTTGCTGCAATGTTCATGGGTTTGAACCTTATTTTTACATCAGCTGCCCACCTGGGATGGGTCCAGATGATATCTCTCATTTTCATCAAACTCTTGAGGGTAGGATGAGAGAAGCCAACAGAAACAGTAATGTGGGAAAATTGGTTCGTCGTATTGAATTGGTGCAGAGAAGGAGCATTATGTATTTTCAGCAGGCCAATTCTCATCCCTTTCTCAAAATTGTAGTTGCACTCCCTACAATGGTTGCTAGCTGCCGTGGTATTCTTGATAAAGGTATTCAGCTTGAAGGTCTGGGCATGAAGAGCTTCATGACTTATGAAAGCAATGTACTCTTTGCCCTTCGCTTCATGATTGATTGCAATATCGTTGGTGGTAATTGGATTGAAATTCCTACTGGAAAATATAAGAAGACAGCAAAGAGCTTGTCTTACTCCCAGTTAGAGTTTGATTGCTTGTATTCAGAATTAATTAGTCATGCTCCAGAAGGCGAATATTCAAAGATGGCTCCATTTCGCATATTGAGTTTTGACATTGAGTGTGCTGGTCGTAAAGGTCATTTTCCTGAGCCTATCCATGATCCTGTTATCCAGATTGCTAATCTGGTTACATTACAAGGAGAAGATCAGCCACTTATTCGTAATGTGATGACCCTTAACTCATGTTCTTCTATAGTTGGTGTTGATGTGATGTCGTTTGATACAGAAAGAGAAGTCCTGCTGGCTTGGAGGGATTTTATCCGTGAAGTTGACCCCGATATTATAATTGGATATAACATCTGCAAATTTGACCTGCCATATCTTATTGAGAGAGCTCAGACCCTGAAAATAGCAGAATTTCCAATTCTGGGCCGTGTCAGGAACAGTAGGGTTCGAGTAAGGGATACAACTTTCTCATCAAGACAGTATGGAACCAGGGAAAGTAAAGAAGTTACAATAGAAGGGAGAGTTCAGTTTGATTTGCTCCAGGTTATGCAAAGAGACTACAAATTAAGTTCTTACTCTTTAAATTCAGTCTCGGCACACTTCCTTTCTGAGCAGAAAGAGGATGTTCATCATTCAATTATATCTGATCTTCAGAATGGAAATGCAGAAACTAGGAGGCGCCTTGCTGTTTATTGTTTAAAGGATGCTTATCTCCCTCAACGGCTTTTGGATAAATTGATGTTCATTTACAATTATGTGGAGATGGCTCGAGTAACAGGTGTCCCAATATCTTTTCTGCTTTCCAGGGGCCAAAGCATTAAGGTACTTTCTCAGCTTCTTCGGAAGGCAAAACAGAAAAACCTGGTTATTCCTAATGTCAAACAGGCAGGTTCAGAACAAGGAACATATGAAGGTGCCACTGTATTGGAGGCAAGGGCTGGATTTTATGAAAATCCAATTGCTACTTTAGATTTTGCATCCTTGTATCCATCAATTATGATGGCCTATAATTTATGTTATTGCACTCTGGTGACCCCTGAAGATGTTCGCAAACTCAACCTCCCTCCAGAGTCTGTGAACAAAACTCCATCTGGAGAAACATTTGTTAAATCAAGTTTACAAAAGGGAATACTTCCTGAAATTCTTGAAGAGCTATTAGCAGCTCGTAAAAGGGCAAAAGCAGATTTAAAGGAGGCAAAAGATCCCCTTGAGAAGGCCGTGCTCGATGGTCGACAACTGGCCCTGAAGATCAGTGCAAATTCTGTATATGGGTTTACAGGGGCTACTGTGGGTCAGTTACCATGTTTAGAGATTTCGTCAAGTGTAACAAGCTACGGTCGACAAATGATCGAGCACACAAAAAAACTTGTGGAAGATAAATTTACAGTGCTTAATGGCTACGCACACAATGCTGAGGTAATATATGGGGACACGGATTCAGTCATGGTACAATTTGGTGTTTCTGCTGTAGAACAGGCTATGAACTTGGGGAGAGAAGCAGCTGAATATATTAGTGGAACTTTCACGAAACCCATCAAACTAGAGTTTGAGAAGGTTTATTATCCATATCTCCTGATTAGCAAGAAGAGATATGCTGGTTTGTTTTGGACAAAGCCAGACAATTTTGACAAAATGGACACTAAAGGTATCGAAACAGTTCGGAGAGACAATTGTTTATTGGTCAAAAACCTGGTCAACGATTGCCTCCACAAAATACTGATTGATAGGGACATCCCTGGGGCAGTTCAGTATGTTAAAAATGCAATTTCAGATCTTCTTATGAACCGTATGGATTTGTCACTTTTGGTTATTACAAAGGGTTTGACGAAGACAGGAGATGATTATGAAGTAAAAGCAGCTCATGTTGAACTTGCTGAACGGATGCGCAAGCGAGATGCTGCCACTGCTCCAAATGTTGGGGATAGAGTACCGTATGTTATTATTAAAGCTGCAAAAGGTGCCAAGGCTTATGAGAAATCAGAGGATCCAATATTTGTGCTGGAGAACAATATACCTATAGACCCCCAATACTATCTTGAGAATCAAATTAGCAAGCCTATTCTAAGGATTTTTGAGCCAATTCTGAAGAATGCTAGCAAGGAACTTCTCCATGGAAGCCATACAAGATCTATTTCTATTTCTACTCCTTCAAACAGTGGCATAATGAAATTTGCAAAGAAACAGCTCACTTGCATTGGTTGCAAAGCTTTACTTAGCAATGGAGATCATACTCTGTGTTCTCATTGCAAAGGAAGGGAAGCCGAACTGTACTGCAAATCAGTGGCTCAAGTGTCTGAGCTAGAGATGCTTTTTGGGAGGTTGTGGACACAATGTCAGGAGTGCCAAGGTTCTCTTCATCAGGATGTTCTCTGCACAAGTCGTGATTGTCCAATTTTTTATCGACGAAAAAAGGCTCAGAAAGATATGGCTGAAGCAAAGCTGCAATTGGACCGATGGAACTTCTAA 3267 0.4279 MNKGSRKRPPPPSKPSPATAQPKTQALSQEDEFVDEDVFLDETLISEDEESLILRDIEQRHALAARLAKWTRPPLSPDYLSQSRSVLFQQLEIDYVIGESHKELLPNSSGPAAIIRIFGVTKEGHSVCCNVHGFEPYFYISCPPGMGPDDISHFHQTLEGRMREANRNSNVGKLVRRIELVQRRSIMYFQQANSHPFLKIVVALPTMVASCRGILDKGIQLEGLGMKSFMTYESNVLFALRFMIDCNIVGGNWIEIPTGKYKKTAKSLSYSQLEFDCLYSELISHAPEGEYSKMAPFRILSFDIECAGRKGHFPEPIHDPVIQIANLVTLQGEDQPLIRNVMTLNSCSSIVGVDVMSFDTEREVLLAWRDFIREVDPDIIIGYNICKFDLPYLIERAQTLKIAEFPILGRVRNSRVRVRDTTFSSRQYGTRESKEVTIEGRVQFDLLQVMQRDYKLSSYSLNSVSAHFLSEQKEDVHHSIISDLQNGNAETRRRLAVYCLKDAYLPQRLLDKLMFIYNYVEMARVTGVPISFLLSRGQSIKVLSQLLRKAKQKNLVIPNVKQAGSEQGTYEGATVLEARAGFYENPIATLDFASLYPSIMMAYNLCYCTLVTPEDVRKLNLPPESVNKTPSGETFVKSSLQKGILPEILEELLAARKRAKADLKEAKDPLEKAVLDGRQLALKISANSVYGFTGATVGQLPCLEISSSVTSYGRQMIEHTKKLVEDKFTVLNGYAHNAEVIYGDTDSVMVQFGVSAVEQAMNLGREAAEYISGTFTKPIKLEFEKVYYPYLLISKKRYAGLFWTKPDNFDKMDTKGIETVRRDNCLLVKNLVNDCLHKILIDRDIPGAVQYVKNAISDLLMNRMDLSLLVITKGLTKTGDDYEVKAAHVELAERMRKRDAATAPNVGDRVPYVIIKAAKGAKAYEKSEDPIFVLENNIPIDPQYYLENQISKPILRIFEPILKNASKELLHGSHTRSISISTPSNSGIMKFAKKQLTCIGCKALLSNGDHTLCSHCKGREAELYCKSVAQVSELEMLFGRLWTQCQECQGSLHQDVLCTSRDCPIFYRRKKAQKDMAEAKLQLDRWNF* 1089
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g0846 1088 CDD DNA_polB_delta_exo 291 520 - -
Dod09g0846 1088 Coils Coil 1069 1088 - -
Dod09g0846 1088 Gene3D - 296 514 IPR036397 GO:0003676
Dod09g0846 1088 Gene3D Helix hairpin bin 643 695 - -
Dod09g0846 1088 SUPERFAMILY Ribonuclease H-like 112 534 IPR012337 -
Dod09g0846 1088 SUPERFAMILY DNA/RNA polymerases 553 963 IPR043502 -
Dod09g0846 1088 ProSitePatterns DNA polymerase family B signature. 742 750 IPR017964 GO:0000166|GO:0003676
Dod09g0846 1088 Pfam DNA polymerase family B 528 961 IPR006134 GO:0000166|GO:0003677
Dod09g0846 1088 Gene3D DNA Polymerase, chain B, domain 1 91 267 - -
Dod09g0846 1088 Gene3D Palm domain of DNA polymerase 569 799 IPR023211 -
Dod09g0846 1088 TIGRFAM pol2: DNA polymerase (pol2) 549 959 - -
Dod09g0846 1088 PANTHER DNA POLYMERASE DELTA CATALYTIC SUBUNIT 84 1088 - -
Dod09g0846 1088 PRINTS DNA-directed DNA-polymerase family B signature 740 748 IPR006172 GO:0000166|GO:0003676|GO:0003887
Dod09g0846 1088 PRINTS DNA-directed DNA-polymerase family B signature 679 691 IPR006172 GO:0000166|GO:0003676|GO:0003887
Dod09g0846 1088 PRINTS DNA-directed DNA-polymerase family B signature 587 600 IPR006172 GO:0000166|GO:0003676|GO:0003887
Dod09g0846 1088 CDD POLBc_delta 569 962 - -
Dod09g0846 1088 MobiDBLite consensus disorder prediction 1 32 - -
Dod09g0846 1088 Gene3D - 816 971 IPR042087 -
Dod09g0846 1088 SMART polmehr3 295 754 IPR006172 GO:0000166|GO:0003676|GO:0003887
Dod09g0846 1088 Pfam C4-type zinc-finger of DNA polymerase delta 998 1069 IPR025687 -
Dod09g0846 1088 Pfam DNA polymerase family B, exonuclease domain 121 464 IPR006133 -
Dod09g0846 1088 PANTHER DNA POLYMERASE CATALYTIC SUBUNIT 84 1088 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g0846 Dod-Chr9 26872329 26884943 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod09g0846 4 1088 Core DNA Replication Machinery Family AT5G63960 81.900 0.0 1882
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g0846 K02327 - gmx:100817379 1991.85