Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g0768 ATGGCATCAGGTAATCCATTCTTTGATGAGCTAAGGAGCAAATCCGATGTTGATCCCCCTCAAAATGAAGAGTCAACAGATGTTAGTGAATTAGTGAATGATCCTGCACCAGCTGCTCTTAAACCTAGTGGGACTGTTTCAAGCAGTGTTCGTGAGCTTTTAGAGTGCCCTGTTTGCTTGAATGCCATGTACCCTCCAATCCACCAGTGTTCAAATGGTCACACCATATGCTCAGGTTGCAAGCCTAGGGTCCATAACCGGTGCCCTACTTGTAGGTACGAGCTTGGTAATATCAGATGTCTGGCACTGGAGAAGGTTGCTGCATCTTTGGAACTTCCCTGTAAATATCAAGGTTTTGGGTGTATGGGTATATATCCATATTACAGCAAGCTGAAACATGAATCCCAATGTGCATATAGACCTTATAACTGTCCATATGCTGGTTCAGAATGCTCAGTTATGGGTGATATACCCTACCTAGTGGCCCATCTAAAAGATGATCACAAGGTGGACATGCACAATGGTAGCACTTTTAACCATCGTTATGTCAAATCAAATCCGCAAGAAGTTGAAAATGCCACATGGATGCTCACGGTTTTCAGCTGCTTTGGTCAGTATTTTTGTCTGCATTTTGAAGCTTTTCAGCTAGGAATGGCTCCTGTCTACATAGCCTTTTTGCGGTTTATGGGTGATGATAACGAGGCAAAGAATTATAGCTACAGTCTAGAGGTGGGAGGAAATGGGAGGAAGACGATTTGGCAAGGGGTGCCTAGAAGCATTAGGGACAGCCACCGCAAGGTTCGTGACAGTTTTGATGGTCTCATAATTCAGAGGAATATGGCTCTCTTCTTTTCTGGGGGTGACAGGAAGGAGTTAAAGCTAAGGGTTACCGGTAGGATTTGGAAGGAACAGTGA 915 0.4437 MASGNPFFDELRSKSDVDPPQNEESTDVSELVNDPAPAALKPSGTVSSSVRELLECPVCLNAMYPPIHQCSNGHTICSGCKPRVHNRCPTCRYELGNIRCLALEKVAASLELPCKYQGFGCMGIYPYYSKLKHESQCAYRPYNCPYAGSECSVMGDIPYLVAHLKDDHKVDMHNGSTFNHRYVKSNPQEVENATWMLTVFSCFGQYFCLHFEAFQLGMAPVYIAFLRFMGDDNEAKNYSYSLEVGGNGRKTIWQGVPRSIRDSHRKVRDSFDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQ* 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g0768 304 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 14 304 - -
Dod09g0768 304 PANTHER E3 UBIQUITIN-PROTEIN LIGASE DIS1 14 304 - -
Dod09g0768 304 Pfam Seven in absentia protein family 98 297 IPR018121 GO:0005737|GO:0006511|GO:0007275
Dod09g0768 304 SUPERFAMILY TRAF domain-like 109 301 - -
Dod09g0768 304 CDD RING-HC_SIAHs 54 92 - -
Dod09g0768 304 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 12 107 IPR013083 -
Dod09g0768 304 SUPERFAMILY RING/U-box 48 96 - -
Dod09g0768 304 ProSiteProfiles Zinc finger RING-type profile. 56 92 IPR001841 -
Dod09g0768 304 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 165 297 IPR008974 GO:0005515
Dod09g0768 304 MobiDBLite consensus disorder prediction 1 44 - -
Dod09g0768 304 ProSiteProfiles Zinc finger SIAH-type profile. 109 169 IPR013010 GO:0008270
Dod09g0768 304 CDD Sina 170 298 - -
Dod09g0768 304 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 108 164 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g0768 Dod-Chr9 20255380 20260359 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod09g0768 47 304 C3H Transcription Factor Family AT2G41980 79.845 2.87e-161 449
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g0768 K04506 - gmx:100793457 620.157