Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Dod09g0715 | ATGGATACTGCCCCCGCATTCCTCAGTGACTTACCTCCCCTCAAGAGGCTGAGATTACAACACCAACAACAACTCCAACACCAGAGTCCGTGCTCACCCCTGCCTGCAAAGAAGCGCAAGGAGCCCCGAAATCCAGCTTTTCATGAAAACCCAAACCCAAACCCACCGCCATCACCTCCTCCTTCTTATGCCACCGTTTATTCCCTTCCTGCCAAGAAAAGAATATGCGCCCTCCAACCCCATCTCCTTTCCAACGACGCCGTTTCGCCCTTCGACCTCAACGTCGAATACAACCCGTATCTTGAACCACTTGAATCCGCCAGCAAGACCCGAATTTTCACCGCATCTCCCCACAAGCCGAGACAACCCGAAGAGGAGCAACACGTTGAAGGTGATGATGGTAATAGGAACGGTGATGATGATGATGATGATGATGGGATTTTATGCTGTGTGTGCCAGAGCACGGACGGTGACCCTTCGGACCCCATCGTTCTGTGCGACGGGTGCGACCTCATGGTGCACGCTTCCTGCTACGGGAACCCCCTATCAAAGGGCGTCCCTGAAGGTGACTGGTTCTGCGAACGGTGTCGTCTCAAAGACGATGACAACGGCAAGGGTGAGTTGTTCTCGTCTTGTTCTTGCTGCCTGTGCCCCGTGAAGGAAGGAGCGGTGAAAAGGACCACGGACCGACGCTGGGCCCACATCGTTTGTGCAGTGCTGGTGCCAGAGGTGTTCTTCTTGGACCCGGAAGGGAGGGAGGGGATCGATTGCTCCAAGGTTCCGAGGAGGAGGTGGTCGGAGAGTTGTTACGTTTGCGGTTCCTGTGATGGCTGTGCCATCGTGTGCTCTGAGCCCAAATGCTGTTTGGCATTTCATGTTACTTGTGGGCTTAAAGAGGAGCTCTGCATTGAGTATAAGCAAGGGAAGAAGGGTGCTACCGTTGTTGCTGGCTTCTGCAAGAGCCACTCGCAACTATGGGAAAAGCTACAGCAGTCAGGGAAATACAAAATTGTTGCCATTGAAGATAAATAG | 1032 | 0.5329 | MDTAPAFLSDLPPLKRLRLQHQQQLQHQSPCSPLPAKKRKEPRNPAFHENPNPNPPPSPPPSYATVYSLPAKKRICALQPHLLSNDAVSPFDLNVEYNPYLEPLESASKTRIFTASPHKPRQPEEEQHVEGDDGNRNGDDDDDDDGILCCVCQSTDGDPSDPIVLCDGCDLMVHASCYGNPLSKGVPEGDWFCERCRLKDDDNGKGELFSSCSCCLCPVKEGAVKRTTDRRWAHIVCAVLVPEVFFLDPEGREGIDCSKVPRRRWSESCYVCGSCDGCAIVCSEPKCCLAFHVTCGLKEELCIEYKQGKKGATVVAGFCKSHSQLWEKLQQSGKYKIVAIEDK* | 344 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Dod09g0715 | 343 | MobiDBLite | consensus disorder prediction | 48 | 64 | - | - | |
| Dod09g0715 | 343 | MobiDBLite | consensus disorder prediction | 118 | 135 | - | - | |
| Dod09g0715 | 343 | Pfam | PHD-finger | 149 | 197 | IPR019787 | - | |
| Dod09g0715 | 343 | ProSiteProfiles | Zinc finger PHD-type profile. | 146 | 199 | IPR019787 | - | |
| Dod09g0715 | 343 | SMART | PHD_3 | 148 | 197 | IPR001965 | - | |
| Dod09g0715 | 343 | SMART | PHD_3 | 268 | 323 | IPR001965 | - | |
| Dod09g0715 | 343 | CDD | PHD_BRPF_JADE_like | 148 | 196 | - | - | |
| Dod09g0715 | 343 | Pfam | PHD-zinc-finger like domain | 213 | 322 | - | - | |
| Dod09g0715 | 343 | MobiDBLite | consensus disorder prediction | 115 | 141 | - | - | |
| Dod09g0715 | 343 | CDD | ePHD | 214 | 322 | - | - | |
| Dod09g0715 | 343 | PANTHER | PHD FINGER PROTEINS | 133 | 328 | - | - | |
| Dod09g0715 | 343 | ProSitePatterns | Zinc finger PHD-type signature. | 149 | 196 | IPR019786 | - | |
| Dod09g0715 | 343 | ProSiteProfiles | Extended PHD (ePHD) domain profile. | 211 | 323 | IPR034732 | - | |
| Dod09g0715 | 343 | PANTHER | RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN | 133 | 328 | - | - | |
| Dod09g0715 | 343 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 209 | 325 | IPR013083 | - | |
| Dod09g0715 | 343 | SUPERFAMILY | FYVE/PHD zinc finger | 127 | 199 | IPR011011 | - | |
| Dod09g0715 | 343 | MobiDBLite | consensus disorder prediction | 20 | 65 | - | - | |
| Dod09g0715 | 343 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 122 | 208 | IPR013083 | - |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Dod09g0715 | 26 | 342 | C2H2 Transcription Factor Family | AT3G14740 | 51.807 | 2.15e-109 | 321 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TR | PHD | Dod09g0715 | zf-HC5HC2H_2 | 3.1e-25 | CL0390 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Dod09g0715 | K11380 | - | gmx:100802652 | 378.252 |