Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g0642 ATGGGAAAGAAAAAGAAATTGAAGGAAAATGGTGGCAAAGAACACTGCCCTTTAACTGTTTTTGTCTCCAACTTGCCATACTCCTTTTCCAACTCTCAGCTTGAGGAGACATTCAGTGAGATTGGACCTGTCAGGCGCTGCTTCATGGTCACAAAGAAGGGGTCTGCCCAACATCGTGGTTTCGGATATGTTCAATTTGCTGTTGAGGAAGATGCCAACCGTGCTATTGAATTGAAGAATGGTTCATCTGTTGGAGGCCGCAAAATAGCGGTGAAGCATGCAATGCCCCGTCCTCCTCGTGAAGAACGACAATCAAAACCAAATGAAGTTGATAAGACAGATGATCTCATGAAGTCAAAAAATGATGGTAAAGACAGCAGACATTCTGGAGAAGGGAAACCTGTTTCAATTTTGATGGAAGAAGAAGCACAAGTTTCAAATAAACAAAAAAACTCAAGGAAGCCTGTGGAAATGAGAAAAGCAATTCTTTGTAGTGATATAGCAGATGAGGGGGGCTGCTCAGAAAAGCAGAGGGTTGCTAGAACTGTGATATTTGGTGGTCTCATAAATTCAGATATGGCTGAAGACGTTCATGGCCAAGCCAAAGAGATTGGCACTGTGTGTTCTATTAAGTACCCCCTTCCCAAGAAAGATCTTGAACAGCATGGTCTCCTGCAAGATGGCTGCACTTTGGATGCTTCAGCTGTACTCTATACTAGTGTAAAGTCGGCTCGAGCAGCTGTTGCAACATTACATAAAAAAGAGATTGGAGGTGGAACTGTTTGGGCACGTCAACTGGGTGGAGAGGGATCCAAGACTCAGAAATGGAAGCTTATAGTCAGAAACCTTCCCTTCAAGGCCCGCGAAAATGAAATAAGAGATATGTTTTCATCTGCAGGGTATGTGTGGGACGTATTTATTCCACACAATTCAGATACAGGTCTATCTAAGGGTTTTGCATTTGTAAAATTCACCTGCAAGCAAGATGCAGAAAATGCTATTCAAAAGCTCAATGGATCCACGTTTTCTAAACGGCTTGTAGCTGTTGATTGGGCTGTTCCGAAAAAGCTATTTAGTAGTGACGCAAATACTCTTGCCTCACAAAATGGACAAGGGGTAAAAGCTGGTGAAGGTAGTGCTCTTGAGGATGATGTTGAGCTTCTCAGTGATGATCAACCTAGTCATGGAGATGATAGTGATGTAGATTACTCTAGTTCCATGGAGGAGGAAGGTGTTCCTACTGAAGTTAATTTTGATGAGGAAGCAGACATTACTAGAAAGGTTCTTAACAATTTGATTACATCCTCCGCTAAAGGAACGTCAGTGCATGATGATTCTACTTTGTCAGAAGAAAACAAGGAGCCAAAATCAAATGAAATTGTTAAGGATGCTGATAATAAAGCATTGAATGAGTCACAAAATGTTGCAGATGTTTCAAAGCCCAAAATTTCCAGCAAAAGCAAGTTATCAAATCCTAAGCAAACAGAAGATTTTGATTTGCAGCGATCAGTTTTCATAAGTAATCTTCCTTTCGAATGTGATAATGAAGAAGTGAAGCAACGGTTTTTTGCATTTGGGGAAGTAGAATACTTTGTTCCAGTTCTTCACCAAGTGACCAAGCGACCAAGAGGAACTGGTTTTCTTAAGTTTAAAACCACAGAAGCAGCTAATGCTGCAGTTTCAGGGGCAAGTGCTGCTTCAGGCTTGGGTATTTTACTAAAAGGTAGACCATTAAAAGTTTTTAAGGCTTTGGATAAGAAATCAGCTCATGACAAGGCACTTGAGAAGGAAAAAAATGAGGTTCATGACCATCGCAATCTTTACTTGGCAAAGGAGGGACTCATTCTTGAGGGAACTCCAGCTGCTGAAGGGGTTTCAGCCAGTGATATGTTAAAACGCCAAGGGTTGGAAAAGAAAAAGAGGACAAAGCTTCAATCACCAAATTTTCATGTTTCAAGAACTAGACTTGTTATCTACAACTTACCAAAGTCAATGTTGGAAAAAGAACTCAAGAAGCTTTGCATTGATGCAGTCATCTCTAGAGCTACCAAGCAAAAGCCTGTAATTCGGCAGATAAAGTTCTTGAAAGATGTTAAGAAAGGAAAGGTTGTTCCGGAACGGCATTCACGTGGAGTTGCCTTTGTCGAATTTTCAGAGCATCAGCATGCCCTTGTAGCTCTTAGAGTTCTCAACAATAATCCTGAAACTTTTGGTCCTGAACACCGGCCAATTGTCGAGTTTGCTCTTGATAATGTTCAAACACTGAAACATCGGAAGGCAAAGATACAATCCCAGAAACAGGCTTCTCGTGATGACAACAATGCCAATGGAAACAATGAACTGAGCAGAACAGAAGTTGACAGGCATGCAAGGGACAGAAAACGTAAAACTCGAGAGCATGGCAAACCAATGGAGGACTCACTGAATACAAATGGTGAATCAGGTGTTACAGTGCCAAACGGGAAATCCCCAGAAGGACTCAAATCCAAAAGACAGAAAGGGAATCATAAGGGTAGAAGGGCTGAAGAGTTATCACAGAAAGAAGATTCAGGCGCATTGTCCTCAAAGCAAAAGAACAAGCAAAGTGGCGAGAGCCGCGGTGGTGCACCACTGGAAGGTCAGAACACTGCCATTGACACCAAAAAAGCAAAAGCAGGAAACAGAGCAGATGTTGGATCCAGAAAAAGGAAGGTGCAAAACCAAGGACAAGAAGACCAAAAGGTTTATAAGAAACGGCCTAAAAAGAATAAAGAACCGGCTGGGAAAGACGTAGTAGATAAGCTTGACATGCTTATAGAACAATATAGATCCAAGTTCTCACACAAAGGTTCCCAAGGGAATGATGGTGACAAAAAACCTTCCAAGCAGCTTAGAAAATGGTTTGAATCCTAG 2892 0.4167 MGKKKKLKENGGKEHCPLTVFVSNLPYSFSNSQLEETFSEIGPVRRCFMVTKKGSAQHRGFGYVQFAVEEDANRAIELKNGSSVGGRKIAVKHAMPRPPREERQSKPNEVDKTDDLMKSKNDGKDSRHSGEGKPVSILMEEEAQVSNKQKNSRKPVEMRKAILCSDIADEGGCSEKQRVARTVIFGGLINSDMAEDVHGQAKEIGTVCSIKYPLPKKDLEQHGLLQDGCTLDASAVLYTSVKSARAAVATLHKKEIGGGTVWARQLGGEGSKTQKWKLIVRNLPFKARENEIRDMFSSAGYVWDVFIPHNSDTGLSKGFAFVKFTCKQDAENAIQKLNGSTFSKRLVAVDWAVPKKLFSSDANTLASQNGQGVKAGEGSALEDDVELLSDDQPSHGDDSDVDYSSSMEEEGVPTEVNFDEEADITRKVLNNLITSSAKGTSVHDDSTLSEENKEPKSNEIVKDADNKALNESQNVADVSKPKISSKSKLSNPKQTEDFDLQRSVFISNLPFECDNEEVKQRFFAFGEVEYFVPVLHQVTKRPRGTGFLKFKTTEAANAAVSGASAASGLGILLKGRPLKVFKALDKKSAHDKALEKEKNEVHDHRNLYLAKEGLILEGTPAAEGVSASDMLKRQGLEKKKRTKLQSPNFHVSRTRLVIYNLPKSMLEKELKKLCIDAVISRATKQKPVIRQIKFLKDVKKGKVVPERHSRGVAFVEFSEHQHALVALRVLNNNPETFGPEHRPIVEFALDNVQTLKHRKAKIQSQKQASRDDNNANGNNELSRTEVDRHARDRKRKTREHGKPMEDSLNTNGESGVTVPNGKSPEGLKSKRQKGNHKGRRAEELSQKEDSGALSSKQKNKQSGESRGGAPLEGQNTAIDTKKAKAGNRADVGSRKRKVQNQGQEDQKVYKKRPKKNKEPAGKDVVDKLDMLIEQYRSKFSHKGSQGNDGDKKPSKQLRKWFES* 964
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g0642 963 CDD RRM4_RBM28_like 654 751 - -
Dod09g0642 963 MobiDBLite consensus disorder prediction 87 137 - -
Dod09g0642 963 PANTHER RNA-BINDING MOTIF PROTEIN, Y CHROMOSOME, FAMILY 1 MEMBER C-RELATED 8 488 - -
Dod09g0642 963 MobiDBLite consensus disorder prediction 467 494 - -
Dod09g0642 963 MobiDBLite consensus disorder prediction 438 494 - -
Dod09g0642 963 Gene3D - 263 384 IPR012677 -
Dod09g0642 963 MobiDBLite consensus disorder prediction 826 849 - -
Dod09g0642 963 SMART rrm1_1 277 350 IPR000504 GO:0003723
Dod09g0642 963 SMART rrm1_1 503 581 IPR000504 GO:0003723
Dod09g0642 963 SMART rrm1_1 19 92 IPR000504 GO:0003723
Dod09g0642 963 SMART rrm1_1 655 746 IPR000504 GO:0003723
Dod09g0642 963 MobiDBLite consensus disorder prediction 388 419 - -
Dod09g0642 963 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 18 96 IPR000504 GO:0003723
Dod09g0642 963 PANTHER RNA BINDING PROTEIN 503 766 - -
Dod09g0642 963 CDD RRM2_RBM28_like 277 353 - -
Dod09g0642 963 MobiDBLite consensus disorder prediction 782 806 - -
Dod09g0642 963 Gene3D - 653 748 IPR012677 -
Dod09g0642 963 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 502 585 IPR000504 GO:0003723
Dod09g0642 963 MobiDBLite consensus disorder prediction 94 135 - -
Dod09g0642 963 SUPERFAMILY RNA-binding domain, RBD 19 262 IPR035979 GO:0003676
Dod09g0642 963 SMART rrm2_1 19 92 IPR003954 GO:0003676
Dod09g0642 963 SMART rrm2_1 277 350 IPR003954 GO:0003676
Dod09g0642 963 SMART rrm2_1 503 581 IPR003954 GO:0003676
Dod09g0642 963 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 654 767 IPR000504 GO:0003723
Dod09g0642 963 MobiDBLite consensus disorder prediction 444 466 - -
Dod09g0642 963 MobiDBLite consensus disorder prediction 758 963 - -
Dod09g0642 963 PANTHER RNA BINDING PROTEIN 8 488 - -
Dod09g0642 963 MobiDBLite consensus disorder prediction 883 936 - -
Dod09g0642 963 PANTHER RNA-BINDING MOTIF PROTEIN, Y CHROMOSOME, FAMILY 1 MEMBER C-RELATED 503 766 - -
Dod09g0642 963 SUPERFAMILY RNA-binding domain, RBD 272 361 IPR035979 GO:0003676
Dod09g0642 963 SUPERFAMILY RNA-binding domain, RBD 502 674 IPR035979 GO:0003676
Dod09g0642 963 Gene3D - 435 599 IPR012677 -
Dod09g0642 963 Gene3D - 2 109 IPR012677 -
Dod09g0642 963 MobiDBLite consensus disorder prediction 767 781 - -
Dod09g0642 963 MobiDBLite consensus disorder prediction 850 864 - -
Dod09g0642 963 SUPERFAMILY RNA-binding domain, RBD 645 753 IPR035979 GO:0003676
Dod09g0642 963 CDD RRM1_RBM28_like 19 97 - -
Dod09g0642 963 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 276 354 IPR000504 GO:0003723
Dod09g0642 963 MobiDBLite consensus disorder prediction 388 402 - -
Dod09g0642 963 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 20 89 IPR000504 GO:0003723
Dod09g0642 963 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 278 345 IPR000504 GO:0003723
Dod09g0642 963 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 504 561 IPR000504 GO:0003723
Dod09g0642 963 MobiDBLite consensus disorder prediction 943 963 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g0642 Dod-Chr9 11533638 11543992 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod09g0642 19 98 Eukaryotic Initiation Factors Gene Family AT3G11400 36.250 8.80e-08 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g0642 K14573 - gmx:100794821 1441.4