Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g0623 ATGAATGACGGCAGACAGATAGGTCTGCATTATGCGGATAATGGCTTTCCTTATGCTGCTGTTAATGAAAGCAGCTTCGTGGATTTCTTCCAAGGCATCACACATGTTCCAGTCAGTTATGCCTTTGCTGCCTCAATGCCTGATCAGGAAAGTGTCTACTGGTCAATGAACATGAATCCATATAAGTTTGGATTATCTGGTCCTGGGAGTACATCTTTTTATGGTTCTTATGAGGTAAATGATCATTTGCCTAGAATGGAGATCAACAGGGCAGGGTGGGAATATCCTTCCATAGTCGTTACTGAGGAGCCAGCTACAACAGATTCTCCAGCTAGAAGAGATGGAGTGACGAGCATGCAGACTATCCCTGAAGAATACAGTCCAAATCATCACGAGTCCAATAGCAGCCAGGTCATATGGCAAGATGACATTGACCCTGATAATATGACATATGAGGAACTATTGGATCTGGGGGAGGCAGTTGGAACTCAAAGCCGAGGTCTTTCCCAAGAACTGATTGATATGCTTCCAACCTCGAAGTATAAATTTGGTAGTTTGTTCAAAAGAAAAAATTATGGGAAAAGGTGTGTGATATGTCAGATGACATATAAAAGAGGTGACCAGCAAATAAAATTGCCATGCAGTCATGTTTATCATGGTGAATGCATTACCAAATGGCTTAGCATTAACAAGAAATGTCCAGTTTGCAATATCGAGGTGTTTGGCGAAGAATCAATGCAGTAG 744 0.418 MNDGRQIGLHYADNGFPYAAVNESSFVDFFQGITHVPVSYAFAASMPDQESVYWSMNMNPYKFGLSGPGSTSFYGSYEVNDHLPRMEINRAGWEYPSIVVTEEPATTDSPARRDGVTSMQTIPEEYSPNHHESNSSQVIWQDDIDPDNMTYEELLDLGEAVGTQSRGLSQELIDMLPTSKYKFGSLFKRKNYGKRCVICQMTYKRGDQQIKLPCSHVYHGECITKWLSINKKCPVCNIEVFGEESMQ* 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g0623 247 Pfam Ring finger domain 195 237 IPR001841 -
Dod09g0623 247 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 246 IPR033276 GO:0004842|GO:0016567|GO:0046621
Dod09g0623 247 SUPERFAMILY RING/U-box 195 241 - -
Dod09g0623 247 ProSiteProfiles Zinc finger RING-type profile. 196 237 IPR001841 -
Dod09g0623 247 SMART ring_2 196 236 IPR001841 -
Dod09g0623 247 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 157 241 IPR013083 -
Dod09g0623 247 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BIG BROTHER 1 246 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g0623 Dod-Chr9 10750297 10765600 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod09g0623 10 247 C3H Transcription Factor Family AT3G63530 58.159 8.67e-102 294
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g0623 K19045 - gmx:100792734 446.047