Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g0602 ATGAGTGTTGTGCATAGTCATGCTCTAAAATACTCAAACCAAGAAATGGATTCAGACATTGGTGACCCTCAGCCTCAACAACATTGTCATCAGCAGCACAATTCAGGACTAATGCGGTACCGTTCTGCTCCAAGCTCTATTCTGACAAGCCTTGTGGACACAATCAACCATGGCTGCAGTGTCAACCAGGAGGATCACCAGCATTATCTTCCCTCCACAAGTTCAGAAATGGAAACCATGTTGGCAAAGTTGATTTCACCCAACAACAGCAGCGTGCTGAGTTCGGAAACTTTGTGCGGGTTTGGAGGCAGGTCAGAGAAGAAAGTAGGGGACACTAATGTTTCACAGGGACCACAGCACTCTTTTGGGTCTCATGAGGCTCAGATAATTTACCAACCTTATCATGAGCAAATTCAAGGCTTGCCAAATGGTTCTTTAGGTTCTATGAATGCCTTTGATGGCTCATTCAGTGCATTGAACTCCATGGCTTCAGAGAATAGCACACAAACTAAAATGGGTTCTGGCAGTTGCTCCCACCTCATTAGGCAAAAGAGCTCCCCGGCTGGATTTTTCTCCAATTATTCAGTTGATAACGTTGCATGTCTTGCAGCTTTTAGAGCCTGTGATGTCTCAAATGGACAAGCAACTACATCGACCAGTAGTGGGTTACATGGTACTTTGAACTTCTCAACTAAGCCATCCTCTTGCTCCATGCGCATGCCACAGATTGTTGAGAGTGGAAATGAAGGAATGGAACCAAATTGTGTTGAAAACAGGAAGCTGGGGGATGATAATGGCAGCAACAAATGCTATATGCAAAGCTTCACCAGTGACTTCTGGGATGGTTCTGCATCCAATGCCTCCAAAACAGCCAGTGACAACCGTGAAATCATGTTTTCCACTTCAAATAATGCTTTCGAAGCTGAGGATGCAGATTTTGGATATAAAAAATTTGGTTTGACCCACCATTTGAGTCTGCCTAGTTCTTCTACCAAGGTGGCTGGCATGGATAAGCTTTTTCAAGTTCAAGGATCTGTTCCATGTAAAATTAGAGCCAAAAGAGGCTTTGCCACTCACCCAAGAAGCATTGCAGAGAGGGAAAGAAGAACGCGAATTAGCGCAAGAATCAAGAAATTGCAAGACCTTTTCCCAAAATTGGACAAGCAAACAAGCACTGCAGATATGTTGGATTTGGCGGTTGAGTACATCAAAGATTTGCAGAAACAAGTTAAGATACTCAAAGATACTAGGGCAAAGTGCACTTGTTCAAGTAATCAGAAGCAATAA 1287 0.4351 MSVVHSHALKYSNQEMDSDIGDPQPQQHCHQQHNSGLMRYRSAPSSILTSLVDTINHGCSVNQEDHQHYLPSTSSEMETMLAKLISPNNSSVLSSETLCGFGGRSEKKVGDTNVSQGPQHSFGSHEAQIIYQPYHEQIQGLPNGSLGSMNAFDGSFSALNSMASENSTQTKMGSGSCSHLIRQKSSPAGFFSNYSVDNVACLAAFRACDVSNGQATTSTSSGLHGTLNFSTKPSSCSMRMPQIVESGNEGMEPNCVENRKLGDDNGSNKCYMQSFTSDFWDGSASNASKTASDNREIMFSTSNNAFEAEDADFGYKKFGLTHHLSLPSSSTKVAGMDKLFQVQGSVPCKIRAKRGFATHPRSIAERERRTRISARIKKLQDLFPKLDKQTSTADMLDLAVEYIKDLQKQVKILKDTRAKCTCSSNQKQ* 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g0602 428 MobiDBLite consensus disorder prediction 11 34 - -
Dod09g0602 428 Pfam Helix-loop-helix DNA-binding domain 362 407 IPR011598 GO:0046983
Dod09g0602 428 SMART finulus 362 412 IPR011598 GO:0046983
Dod09g0602 428 Gene3D - 358 427 IPR036638 GO:0046983
Dod09g0602 428 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 26 426 - -
Dod09g0602 428 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 359 419 IPR036638 GO:0046983
Dod09g0602 428 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 356 406 IPR011598 GO:0046983
Dod09g0602 428 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 26 426 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g0602 Dod-Chr9 9929120 9932674 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod09g0602 28 424 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G51140 32.771 4.10e-46 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dod09g0602 HLH 6.2e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g0602 - - gmx:100795896 526.939