Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g0575 ATGATGGAGCTTGGCTTGAGCTTAGGAGAGGCTTCAAGGCCACTGGGGTTCATGGAAAAGCCTCTTGAAGCTTCCATCCAATTGGGGTTAGGCTTCAACACCACCTTATCAATTGGTCCACTTATCACTGAACAAAGAGACCAACACCAAGAACAAGAAGAAACACCAAAGCAAAAAATGCATAACAAACACAATATTAATAGTCAAAGGCACAACACTCCGGAAGATGACCATGAAGCTCCAAATGAATACCTTATTAGTCCTAATTCTCTCAGAGTCGGCAATAACGCAGTCCTGCATCAGCTTGATCTTCTTCTTCCCACACCAGCTGCTGCTGCTCCTATCCTTTCACCTTCACAACTCTGCTTCCCATGGCAGGAAAACGGGAGTTGTTCAAGGGGCATGGAAGTGAACAGGGTGTTGACGGAGGCTGAGGAAGGGCCGGCATTGTCATCGTCCCCCAACAGCGCAGCGCTGTCGTTTCAGATGGATCTCTGTGTGTACAACAGAGCAGTAGGGAGCATGAGCGGTGAGGGTTATGATCAAAGGGGTTGTTCCCGAGCAAGTGATGAAGATGAGAACGGTGGCAGTACCAGGAAGAAGATCAGGCTCTCTAAGGAACAATCTGCTTTCCTTGAAGAGTGCTTCAAAGAGCACAACACTCTTAACCCAAAACAAAAACTAGCTCTTGCTAAACAACTCCATCTTCGCCCTCGCCAAGTAGAAGTATGGTTTCAAAACAGAAGAGCAAGGACAAAGTTGAAGCAGACAGAGGTGGACTGCGAGTACTTGAAGAGATGCTGTGAGACACTTACTGAAGAGAATAGGAGGCTTCACAAGGAGATTCAAGAGTTGAGGGCTTTGAAGTCATCAAAACCATTCTATATGCAGTTACCAGCCACTACCTTGACCATGTGCCCATCCTGTGAGCGTGTAGCCCCAAATTCCACCTCCTCCACTTCCTCTGCCACATTTAGTGGTGCTAATACAGGATCCATAGTAGTCACTGCCACTGCCAAAATCAACAATGGAACAACCTCTAAAAGCAATGGATTACCCCTTGGCAAACTCATCATCTTGAATTGA 1086 0.4669 MMELGLSLGEASRPLGFMEKPLEASIQLGLGFNTTLSIGPLITEQRDQHQEQEETPKQKMHNKHNINSQRHNTPEDDHEAPNEYLISPNSLRVGNNAVLHQLDLLLPTPAAAAPILSPSQLCFPWQENGSCSRGMEVNRVLTEAEEGPALSSSPNSAALSFQMDLCVYNRAVGSMSGEGYDQRGCSRASDEDENGGSTRKKIRLSKEQSAFLEECFKEHNTLNPKQKLALAKQLHLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLHKEIQELRALKSSKPFYMQLPATTLTMCPSCERVAPNSTSSTSSATFSGANTGSIVVTATAKINNGTTSKSNGLPLGKLIILN* 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g0575 361 Pfam Homeobox associated leucine zipper 255 289 IPR003106 GO:0006355|GO:0043565
Dod09g0575 361 MobiDBLite consensus disorder prediction 46 61 - -
Dod09g0575 361 MobiDBLite consensus disorder prediction 45 79 - -
Dod09g0575 361 SUPERFAMILY Homeodomain-like 189 256 IPR009057 -
Dod09g0575 361 Coils Coil 268 291 - -
Dod09g0575 361 SMART halz 255 298 IPR003106 GO:0006355|GO:0043565
Dod09g0575 361 PANTHER - 2 355 - -
Dod09g0575 361 PANTHER PROTEIN, PUTATIVE-RELATED 2 355 - -
Dod09g0575 361 MobiDBLite consensus disorder prediction 184 201 - -
Dod09g0575 361 MobiDBLite consensus disorder prediction 178 201 - -
Dod09g0575 361 Pfam Homeodomain 199 253 IPR001356 GO:0003677
Dod09g0575 361 SMART HOX_1 197 259 IPR001356 GO:0003677
Dod09g0575 361 Gene3D - 203 253 - -
Dod09g0575 361 CDD homeodomain 199 256 IPR001356 GO:0003677
Dod09g0575 361 ProSitePatterns 'Homeobox' domain signature. 230 253 IPR017970 GO:0000981|GO:0006355
Dod09g0575 361 ProSiteProfiles 'Homeobox' domain profile. 195 255 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g0575 Dod-Chr9 9286202 9290007 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod09g0575 185 349 Homeobox Transcription Factor Family AT4G37790 62.275 6.48e-68 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Dod09g0575 Homeodomain 8.9e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g0575 K09338 - gmx:100805312 387.882