Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g0574 ATGGAGCTTGATTTGAATCTGGAGCCTTTGGACCCAGCTCATACTTCAATAAATGAATTGGATTCTATACTGGACGAACTTGAGTCTGCCCATGGACATATACAGGACAGAATCAGACAGCTTGAAGCAGTAACTTCCAGGGCTCGGCAGCGTCACCAGTGGCCACCTGTTCACTCGCCGATTCAGATTACAAACTTTACCGGAGAAGTCACAAGAACAGCTGATGTTCAAGATGAAGGGAGGGAAAACCAGGATGTTGAAGAAGGGAAGAGCAAGGGTACCCATTTAATAGCTAAGGCATTGGGGGTGGAAACAGATGCCAGAGCCAGTAAAGTAGAGGGAAGTTCTGGGAAATTTTATGATTGTAATATATGCCTGGACATTGCAAAAGATCCTGTTTTGACCTGTTGTGGTCACTTGTTTTGTTGGTCGTGCTTCTATCCGTTGCCAAATGCTTATTCGAATGTGAAGAAATGCCCTGTTTGTGAAGGAGAGGTCACTGAGAAAGGCATTATTCCGATTTATGGAAATGGAAGTGGCACTAGTAATTGTCAGTCGGGATCAAAAGAAACCGGTTTGAGAGTTCCTCCTCGGCCCCAAGCACCTAGAGTTGAGAGTATGAGGCAGCAACTTATAAGCCAAGGGGCATCTTCTTCTACAATCCGGAATATTCGGCGGTTTCATAGCCTAATTGCTGGACGAGGAGAACGAGTTCGGTCAGAAATCCCCAATGTGGCAGCTGGTAGAAATAACGTTGTTGTCACTCAATCTCGCTTGGTGGCAGACAATAATCAACATTCTCATTCCCAGCCAATTTCAAGGTTGTTACTGCAAGGAGCTGCTTCATTTTCATCCCTCTCATCAGCAATAAATTCTGCATTGATTTCTAGAGAAGGACTAGTTGAGGACCTTGAATCATATGTTCATGGTCACCACATGGGAGGAAGCATGCAGTTAAATCCTCATGCTCCTAATAGAGATTCAGCCTTTAATCTTGCTGCTGCAAACCATTCAGAGAGTCTTTCTCGAAACGTAGCTGCAACCAATTCCACAGCTGCAGGTTCAGCTTCAGTTTCTCCTTTAAGTACAAGTGATGACACAGAAATCCAAACAACAGATAGTAATATACAGATTATATCTTCGGACCCTTCTTCATCTTCCAATAGAAGAAGAACTGGTGTTTCAAGACGAGATTCAAATGAGCCCAGAAGACGAAGGTTAAGATGA 1227 0.4385 MELDLNLEPLDPAHTSINELDSILDELESAHGHIQDRIRQLEAVTSRARQRHQWPPVHSPIQITNFTGEVTRTADVQDEGRENQDVEEGKSKGTHLIAKALGVETDARASKVEGSSGKFYDCNICLDIAKDPVLTCCGHLFCWSCFYPLPNAYSNVKKCPVCEGEVTEKGIIPIYGNGSGTSNCQSGSKETGLRVPPRPQAPRVESMRQQLISQGASSSTIRNIRRFHSLIAGRGERVRSEIPNVAAGRNNVVVTQSRLVADNNQHSHSQPISRLLLQGAASFSSLSSAINSALISREGLVEDLESYVHGHHMGGSMQLNPHAPNRDSAFNLAAANHSESLSRNVAATNSTAAGSASVSPLSTSDDTEIQTTDSNIQIISSDPSSSSNRRRTGVSRRDSNEPRRRRLR* 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g0574 408 CDD RING-HC_AtRMA_like 120 164 - -
Dod09g0574 408 Pfam Zinc finger, C3HC4 type (RING finger) 121 167 - -
Dod09g0574 408 MobiDBLite consensus disorder prediction 352 408 - -
Dod09g0574 408 MobiDBLite consensus disorder prediction 182 202 - -
Dod09g0574 408 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 6 378 IPR045103 GO:0005783|GO:0006511|GO:0061630
Dod09g0574 408 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 6 378 - -
Dod09g0574 408 SMART ring_2 122 162 IPR001841 -
Dod09g0574 408 Coils Coil 24 44 - -
Dod09g0574 408 MobiDBLite consensus disorder prediction 352 390 - -
Dod09g0574 408 SUPERFAMILY RING/U-box 111 170 - -
Dod09g0574 408 ProSiteProfiles Zinc finger RING-type profile. 122 163 IPR001841 -
Dod09g0574 408 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 103 176 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g0574 Dod-Chr9 9180071 9182295 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod09g0574 61 357 C3H Transcription Factor Family AT3G58030 31.232 1.90e-32 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g0574 K10666 - gmx:100793230 382.104