Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g0552 ATGAATGTTCGAGGGAGTTTATATTACTGTTATGTGAAAGAGGAAGAATTGGCTGAGGTGGTTCAATCACTATGGAAGGCTGCAACTGTATTGAGCCGCAATGGCCAGGCTGATGAATTATTGATGAAATACCAATATATCTCTGATTTCTTTATTGCCCTTGCTTATTTCTCTATCCCTCTGGAGCTTATCTACTTTGTTAAGAAATCAGCAGTATTTCCATATAGATGGGTCCTTGTTCAGTTTGGTGCTTTCATAGTACTATGTGGAGCAACACATCTAATTAATTTATGGACCTTCACAGTGCATACAAAAACTGTGGCCATAGTAATGACCACTGCTAAGGTTTTAACTGCTGTGGTTTCATGTGCAACTGCCCTTATGCTTGTACATATTATTCCTGATTTACTAAGTGTTAAAACTAGAGAACTATTCTTGAAGAACAAGGCTGCCGAACTTGATAGAGAAATGGGCCTGATTCGCACACAGGAAGAAACTGGTCGACATGTTAGGATGCTGACTCATGAGATTAGAAGCACTTTGGATAGACACACGATACTGAAAACAACTCTTGTTGAACTGGGTAGAACTTTGGCACTTGAGGAGTGTGCCTTGTGGATGCCTACACACACTGGGTTGGAACTTCAACTCTCCTACACATTGCGACAACAAAACCCAGTTGGATACACAGTGCCCATTCATCTTCCTGTGATCAATCAAGTATTTAGTAGTAACCGTGCAGTAAAAATTTCACCGAATTGCCCAGTTGCTAGATTGCGACCTCATACAGGAAACTACATGCCCGGGGAGGTAGTTGCCGTTCGGGTCCCTCTTCTACATCTATCTAACTTCCAAATATATGATTGGCCCGAGGTTTCAACGAGAAGCTATGCCTTGATGGTGTTGATGCTTCCATCAGATAGTGCTAGACAATGGCATGTACACGAGTTAGAGTTGGTTGAGGTAGTTGCTGATCAGGTAGCTGTTGCTCTTTCACATGCTGCAATCTTGGAAGAGTCAATGAGGGCAAGGGATATGCTTATGGAGCAGAATGTTGCACTTGATCTGGCAAGAAGGGAAGCAGAAACTGCAATACGTGCTCGCAATGACTTTTTGGCTGTTATGAATCACGAGATGAGAACTCCCATGCATGCAATTATTGCACTGTCTTCATTGTTACAGGAAACAGAGTTGACAGCTGAGCAACGTCTGATGGTAGAGACAATATTGAAAAGCAGCAATTTGTTGGCTACACTCATCAATGATGTTTTGGATCTTTCACGGCTTGAAGATGGCAGTCTTCAACTTGAAGCAACAACATTTAGCCTTCATTCTGTTTTCAGAGAGGTCCTGAACCTGATTAGGCCTGTTGCATCTGTGAAAAAGTTGTCACTCACTTTACATTTAGCTCCAGATTTGCCAGTGTATGCCATTGGTGATGAAAAACGTCTCATGCAAACTTTTCTGAATGTTGTTGGTAATGCGGTGAAGTTCTCAAAAGCGGGCAGCATTTCCATCACAGTTTTTGTTGCAAATCCTGAATCCTTCAAGGATGATGCTAGAATTCCCGACTTCCATCCAGTGCCAAGTGATGGTCACTTTTATTTGCGAGTACAGGTAAAAGATATGGGATCTGGAATCAGTCCACAAGATATTCCAAACTTATTCACTAAGTTTGCACAAAGCCAGTCACTAACAACAAGAGGTCCTGCTGGAAGTGGACTTGGCCTTGCCATTTGTAGGAGGTTTGTAAATCTCATGGAAGGTCATATTTGGATTGAAAGTGAAGGTATTGGTAAAGGATGTACAGTCACTTTCATTGTGAAACTTGGAATCCCTGACCGATCAAATGAACCTAAACTGCCTTATGTACCTAAAGTTCTGGGAAATCATGGATCTACAAACTTTGCAGGTCTCAAGGTTCTTGTGATGGATGATAATGGGGTTAGCAGGACAGCAACAAAGAAAATTCTTATTCATTTAGGATGTGACGTCACAACTGTAAGCTCCAGTGAAGAGTGTTTGCGTGTCGTTTCCGCAGAACACAGAGTGGTGTTCATGGATGTGTGTACAGGATTAGACGGTTATGAACTAGCGATACGGATACATGAGAAGTTTATGAAACGTCCAGATAGGCCCCTAATAGTTGCTCTTACTGGAAACACCAACAAGGTGACTAGAGAGAACTGTATGAGGGTTGGTATGGATGGCCTTATACTGAAACCTGTTCCTATTGACAAAATGAGGGGTGTTTTATCTGAACTCCTGGAGCACCGGGTTCTATTTGAAACAATGTAA 2298 0.4199 MNVRGSLYYCYVKEEELAEVVQSLWKAATVLSRNGQADELLMKYQYISDFFIALAYFSIPLELIYFVKKSAVFPYRWVLVQFGAFIVLCGATHLINLWTFTVHTKTVAIVMTTAKVLTAVVSCATALMLVHIIPDLLSVKTRELFLKNKAAELDREMGLIRTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLALEECALWMPTHTGLELQLSYTLRQQNPVGYTVPIHLPVINQVFSSNRAVKISPNCPVARLRPHTGNYMPGEVVAVRVPLLHLSNFQIYDWPEVSTRSYALMVLMLPSDSARQWHVHELELVEVVADQVAVALSHAAILEESMRARDMLMEQNVALDLARREAETAIRARNDFLAVMNHEMRTPMHAIIALSSLLQETELTAEQRLMVETILKSSNLLATLINDVLDLSRLEDGSLQLEATTFSLHSVFREVLNLIRPVASVKKLSLTLHLAPDLPVYAIGDEKRLMQTFLNVVGNAVKFSKAGSISITVFVANPESFKDDARIPDFHPVPSDGHFYLRVQVKDMGSGISPQDIPNLFTKFAQSQSLTTRGPAGSGLGLAICRRFVNLMEGHIWIESEGIGKGCTVTFIVKLGIPDRSNEPKLPYVPKVLGNHGSTNFAGLKVLVMDDNGVSRTATKKILIHLGCDVTTVSSSEECLRVVSAEHRVVFMDVCTGLDGYELAIRIHEKFMKRPDRPLIVALTGNTNKVTRENCMRVGMDGLILKPVPIDKMRGVLSELLEHRVLFETM* 766
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g0552 765 Pfam GAF domain 182 331 IPR003018 GO:0005515
Dod09g0552 765 SMART HisKA_10 367 432 IPR003661 GO:0000155|GO:0007165
Dod09g0552 765 Pfam His Kinase A (phospho-acceptor) domain 368 432 IPR003661 GO:0000155|GO:0007165
Dod09g0552 765 PANTHER ETHYLENE RECEPTOR 1-LIKE 30 762 - -
Dod09g0552 765 SMART gaf_1 182 341 IPR003018 GO:0005515
Dod09g0552 765 Gene3D - 432 617 IPR036890 -
Dod09g0552 765 PANTHER TWO-COMPONENT SENSOR HISTIDINE KINASE 30 762 - -
Dod09g0552 765 Gene3D - 333 431 - -
Dod09g0552 765 SMART HKATPase_4 479 612 IPR003594 -
Dod09g0552 765 SUPERFAMILY CheY-like 635 757 IPR011006 -
Dod09g0552 765 PRINTS Bacterial sensor protein C-terminal signature 571 589 IPR004358 GO:0016310|GO:0016772
Dod09g0552 765 PRINTS Bacterial sensor protein C-terminal signature 554 564 IPR004358 GO:0016310|GO:0016772
Dod09g0552 765 PRINTS Bacterial sensor protein C-terminal signature 536 550 IPR004358 GO:0016310|GO:0016772
Dod09g0552 765 Gene3D - 633 765 - -
Dod09g0552 765 ProSiteProfiles Response regulatory domain profile. 640 756 IPR001789 GO:0000160
Dod09g0552 765 Pfam Response regulator receiver domain 641 749 IPR001789 GO:0000160
Dod09g0552 765 SUPERFAMILY GAF domain-like 185 334 - -
Dod09g0552 765 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 479 610 IPR003594 -
Dod09g0552 765 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 353 433 IPR036097 GO:0000155|GO:0007165
Dod09g0552 765 PIRSF Ethylen_sen_hybr_HK 17 763 IPR014525 GO:0004672|GO:0005789|GO:0009723|GO:0038199|GO:0051740
Dod09g0552 765 Gene3D - 160 332 IPR029016 -
Dod09g0552 765 ProSiteProfiles Histidine kinase domain profile. 374 612 IPR005467 -
Dod09g0552 765 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 421 610 IPR036890 -
Dod09g0552 765 CDD HisKA 365 428 IPR003661 GO:0000155|GO:0007165
Dod09g0552 765 SMART REC_2 639 752 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g0552 Dod-Chr9 8719310 8734054 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod09g0552 37 765 Miscellaneous Gene Families AT1G66340 81.122 0.0 1208
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Dod09g0552 GAF 6.8e-15 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g0552 K14509 - gmx:100795799 1296.95