Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g0534 ATGGCGGAACAACCAGAGCACAACCATCACGATGAGGACGACCAATCTCAGAACAGGAAGAAGAAGAAGCTGCGCAAGAGGAAGAGGCCCCGCAAGGCCCAACACGACGAAACCCACCACCATTCCGACGAAGACCAAGAGAACGAGGAGAACCAAAACAACCACGATGACAAGAAGAAGAACCTTAAGAGCCCGAAGAAACAAGCCCAAGAAGAAGAAGATGATGGCGATGATGGTGATGGTGATGGTGTCGACGAGGGAGAAGAGAAAAATGCAAAGAGCGTTGGCTCGGGAATTATGAGTACCGAGTCATTTTCTTCTCTGGGATTGTCCGAACCCACTTCTAAGGCTATTATGGATATGGGCTTCCAGCGCATGACTCAGATTCAAGCGAGAGCGATTCCGCCGCTTCTGATAGGAAAAGACGTTCTGGGTGCGGCTAGGACAGGTGCTGGGAAAACACTTGCATTTTTAATTCCGGCTGTGGAATTGTTGTACAATGTTCAGTTTACGCCTCGCGATGGAACTGGTGTTGTTGTCATATGCCCAACTAGAGAGCTTGCTATTCAGACACATGCTGTGGCAAAGGAATTGCTCAAGTATCATTCACAAACTCTTGGATTGGTTATTGGGGGTTCAGGTAGAAAGGGAGAAGCTGAGCGCATTGTTAAAGGTGTAAATCTGTTGGTAGCAACGCCTGGTCGTCTTCTTGATCACCTTCAAAATACAAAGGGGTTCATATACAGAAATTTGAAGTGCCTCATGATTGATGAAGCTGACAGGATATTGGAAGCTAACTTTGAGGAGGAAATGAAGCAGATCATTAACATACTTCCCAAGAATAGACAAACAGCTTTGTTTTCAGCTACACAAACAAAGAAGGTTGAGGATCTGGCCCGCTTGTCATTTCAGACAACTCCCATCTATATGGATGTAGATGATGGGAGGACAAAGGTCACAAATGAAGGATTGGAGCAGGGCTATGTTGTTGTTTCCTGTGCGAAGCGATTTGTTGTTCTATATTCATTCTTGAGGAGATATCAATCTAAAAAAGTGATGGTCTTTTTCTCTTCATGCAACTCTGTCAAATTCCATGCAGACCTTCTCAAGTGCGCTGGACTGGATTGCTTAAATATTCATGGAAAACAAAAGCAGCACGCCCGAACCACTACCTTCTTTAACTTCATTAAAGCAGAAAAGGGGATATTGCTCTGTACTGACGTTGCTGCTCGTGGACTTGACATACCTGATGTGGACTGGATTGTGCAGTATGATCCTCCAGATGAACCAAAGGAATATATCCATAGGGTTGGTAGAACAGCTCGTGGGGAAGGTGGAAAAGGAAATGCTTTACTTTTCCTGATTCCTGAAGAATTGCAATTTCTTCGCTATCTGAAGGCAGCAAAGGTCCCTGTAAAAGAGTATGCATTTGATGAAAAGAAGCTTGCAAATATACAGTCTCAACTGGAAAAGCTGGTGGCTGGCATTTATCATTTGAACACTATGGCTAAAGAGGCTTATAGGTCGTATTTATTAGCATATAATGCACACTCTATGAAGGATATATTCAATGTTCACCGCCTTGATTTACAGGCTGTTGCTGCTTCATTCTGTTTCTCAAACCCACCAAAGGTGAATCTGAACATAGACAGCAGTGCTTCAAAGCATAGGAAGAAAATACGCAAAGTGGAAGGGAGCAGATATGGATTCAGCGAGAGTAATCCTTATGGAAAGGCAAAATAA 1743 0.4383 MAEQPEHNHHDEDDQSQNRKKKKLRKRKRPRKAQHDETHHHSDEDQENEENQNNHDDKKKNLKSPKKQAQEEEDDGDDGDGDGVDEGEEKNAKSVGSGIMSTESFSSLGLSEPTSKAIMDMGFQRMTQIQARAIPPLLIGKDVLGAARTGAGKTLAFLIPAVELLYNVQFTPRDGTGVVVICPTRELAIQTHAVAKELLKYHSQTLGLVIGGSGRKGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYRNLKCLMIDEADRILEANFEEEMKQIINILPKNRQTALFSATQTKKVEDLARLSFQTTPIYMDVDDGRTKVTNEGLEQGYVVVSCAKRFVVLYSFLRRYQSKKVMVFFSSCNSVKFHADLLKCAGLDCLNIHGKQKQHARTTTFFNFIKAEKGILLCTDVAARGLDIPDVDWIVQYDPPDEPKEYIHRVGRTARGEGGKGNALLFLIPEELQFLRYLKAAKVPVKEYAFDEKKLANIQSQLEKLVAGIYHLNTMAKEAYRSYLLAYNAHSMKDIFNVHRLDLQAVAASFCFSNPPKVNLNIDSSASKHRKKIRKVEGSRYGFSESNPYGKAK* 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g0534 580 SMART ultradead3 122 327 IPR014001 -
Dod09g0534 580 PANTHER RNA HELICASE 46 580 - -
Dod09g0534 580 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 255 263 IPR000629 -
Dod09g0534 580 Pfam Domain of unknown function (DUF4217) 485 545 IPR025313 -
Dod09g0534 580 Pfam DEAD/DEAH box helicase 127 298 IPR011545 GO:0003676|GO:0005524
Dod09g0534 580 Pfam Helicase conserved C-terminal domain 339 443 IPR001650 -
Dod09g0534 580 MobiDBLite consensus disorder prediction 36 72 - -
Dod09g0534 580 MobiDBLite consensus disorder prediction 1 109 - -
Dod09g0534 580 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 339 493 IPR001650 -
Dod09g0534 580 MobiDBLite consensus disorder prediction 20 35 - -
Dod09g0534 580 MobiDBLite consensus disorder prediction 95 109 - -
Dod09g0534 580 MobiDBLite consensus disorder prediction 1 19 - -
Dod09g0534 580 CDD DEADc_DDX18 114 311 IPR044773 GO:0003724|GO:0005524
Dod09g0534 580 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 51 46 580 - -
Dod09g0534 580 Gene3D - 320 564 IPR027417 -
Dod09g0534 580 Gene3D - 83 315 IPR027417 -
Dod09g0534 580 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 134 309 IPR014001 -
Dod09g0534 580 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 103 131 IPR014014 GO:0003724
Dod09g0534 580 SMART DUF4217_3 484 547 IPR025313 -
Dod09g0534 580 SMART helicmild6 363 444 IPR001650 -
Dod09g0534 580 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 175 465 IPR027417 -
Dod09g0534 580 CDD SF2_C_DEAD 324 454 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g0534 Dod-Chr9 8374853 8381772 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod09g0534 98 463 Eukaryotic Initiation Factors Gene Family AT3G19760 28.065 7.74e-46 165
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g0534 K13179 - gmx:100798290 898.271
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod09g0534 09 8374853 8381772 Dod09g0534 09 8374853 8381772 ECH