Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g0517 ATGAAGGTCAGGGCAGTGAAGCTGAGGGAGGCCCACCCCCACAAGGGCGGGCCCCCTTCTTTCTGCTCGGTCCTGTGGGACCAGGCCCGCCACCTCGTCACTGCCGCCGCCTCCGATGTCTCCGTCTCCATCCACGACCCTCTCCTCCCCTCCGCCGCCCCCAGGGTCCTCCGCCACCACCGCGACGGGGTCACTGCCCTCGCCCTTAGCCCCAACTCCACTTGCCTTGCTTCCGGATCCATCGATCACTCTGTCAAACTCTACAAATTCCCCGGTGGTGAGTTCGAGACTAATATCACCAGGTTTACACTTCCAATACGTTCCCTAGCATTTAACAAATCAGGGAGCATGTTGGCAGCTGCTGGTGATGATGAGGGGATCAAACTCATAAACACAATTGATGGCTCTATTGCTAGGGTCCTTAAAGGGCACAAAGGGTCTCTCACTGGCTTAGCTTTTGACCCCAATGGTGAATACTTAGCATCCCTGGATTCAACTGGAACCGTTATTTTCTGGGAACTCCACTCAGGGAGAATCCTTCATAACCTCAAAGGCATTGCTCCAGACAATGGGGTAGATTATTCAACCATGAATGTTCTTTGCTGGAGTCCTGATGGTGAGACCCTAGCTGTTCCAGGGCTGCGAAACGATGTGGTAATCTATGATAGGGACACTGCTGAGAAGTTGTTTTCTCTGAGAGGTGATCACACACAACCCATATGCTTCCTGTGTTGGTCACCCAATGGTAAGTACATGGCTACCTCTGGTTTAGACAAGCAGCTTCTAATATGGGATGTTGATAGGAAACAAGACATTGATAGACAAAAATTTGATGAAAGAATCTGTTGCATGGCTTGGAAGCCCATTGGGAATGCCTTAGCTGTTATTGATGTTATGGGAAAGTATGGTATCTGGGATTCTGTCATCCCTTCATCTATGAAGTCTCCAACTGAGGATATACCTGTGCAGAGCAAGAATAGCAACGGGCTTCTTCTGTTTGAAGAGGAGGATCCAGAACCTAGTGCAAGTGGAAGCTTGAGTGATCTTGGTGAGAATAGTAATGGTGAGTCTGAGCCACCTAGCAGGAAAAGGTTGCGTAAACAGTCTTTCAGCGAGGAAAACTTTGATGAGGATGGTGGTGATGAAATCGATTTGTTTCCCAAGGTTGAATCTCATAAGAAGCGAAATCGCTCACACAGGGAGAATTTGGATGTTGTGAATGTGGGATTGAGAAGCACGATGGTTACATCTAGGCCAAAGATGCAAGAGGCATTTCAGCCAGGATCCACTCCAATGCAGCCTGGAAAAAGGCGCTTCTTATGCTACAATATGCTTGGACTTATAACCACTGTTGAACATGATGGATACTCTCATATTGAGATTGATTTTCATGATACTGGCAGCAGTCCACGAATTCCATCGATGACTGATCATTTTGGATTTACAATGGCTTCTTTGAATGAGAATGGAAGTGTCTTTGCAAATCCTTGCAAGGGGGAGAATAACATGAGCACTCTCATGTATCGCCCATTTAGTAGCTGGGCAAATAATAGTGAGTGGTCTATGCGCTTTGAAGGAGAAGAAGTGAAGGCGGTTGCACTTGGTGCTGCTTGGGTGGCTGCAGTAACTAGTTTTAACTATCTTCGCATCTTTACTGAGGGTGGTCTGCAGAGACATGTTATTTCACTAGATGGGCCCGTGGTGACTGCATCAGGTTTCAAGGATAAGCTTGCAATTGTCACTCATGCATCTGAGTGCCTTTCCTCCAATGATCAGGCGCTAGAATTTAGAGTATTTAATATACCTCATGGGACCCAACCCCTTCGAGGTCGTTTGCCATTATCACCGGGTTCATCTCTAAGTTGGTTCGGGTTTAGCGAAGAAGGCCAATTGAGTTCCTATGATTCTAAGGGTGTGTTAAGAGCATATACAAGCCAATTTGGTGGTAGCTGGCTCCCTCTCTTCAGTGCTGTCAAAGAGCAGAAATCAGATGAAAACTATTGGGTTGTGGGGTTGAATACAAGCAAGTTATTCTGTGTAGCATGCAAAAAGCCCGATATCTTCCCACAGGTGTTGCCAAAGCCAGTCCTTACTCTACTAAATCTTTCATTTCCTCTTGCTTCCTCTGATTTGGGATCTGAAGCCCTTGAAAATGAGTTTATAATGAACAGCATGCATCTCTTTGAGATTCAGAAACAAATGGAAGAAATGGCTAGTGTCGGTTTGGACACTAGTTCATTTGATGATGAAGCTTTCAATTTTGAAGCAGCACAAGATAGGTGTATACTTAGGCTAATAGCATCCTGCTGCAACGGTGACAAGCTAGTGCGTGCGACTGAACTTGTTAAGCTTTTGACATTGGAAAAATCAATGAAAGGTGCGATAAAACTGGTTACTGCTCTCAAGCTTCCAAACTTGGCCGAAAGGTTCAGCAGCATATTAGAG 2445 0.4622 MKVRAVKLREAHPHKGGPPSFCSVLWDQARHLVTAAASDVSVSIHDPLLPSAAPRVLRHHRDGVTALALSPNSTCLASGSIDHSVKLYKFPGGEFETNITRFTLPIRSLAFNKSGSMLAAAGDDEGIKLINTIDGSIARVLKGHKGSLTGLAFDPNGEYLASLDSTGTVIFWELHSGRILHNLKGIAPDNGVDYSTMNVLCWSPDGETLAVPGLRNDVVIYDRDTAEKLFSLRGDHTQPICFLCWSPNGKYMATSGLDKQLLIWDVDRKQDIDRQKFDERICCMAWKPIGNALAVIDVMGKYGIWDSVIPSSMKSPTEDIPVQSKNSNGLLLFEEEDPEPSASGSLSDLGENSNGESEPPSRKRLRKQSFSEENFDEDGGDEIDLFPKVESHKKRNRSHRENLDVVNVGLRSTMVTSRPKMQEAFQPGSTPMQPGKRRFLCYNMLGLITTVEHDGYSHIEIDFHDTGSSPRIPSMTDHFGFTMASLNENGSVFANPCKGENNMSTLMYRPFSSWANNSEWSMRFEGEEVKAVALGAAWVAAVTSFNYLRIFTEGGLQRHVISLDGPVVTASGFKDKLAIVTHASECLSSNDQALEFRVFNIPHGTQPLRGRLPLSPGSSLSWFGFSEEGQLSSYDSKGVLRAYTSQFGGSWLPLFSAVKEQKSDENYWVVGLNTSKLFCVACKKPDIFPQVLPKPVLTLLNLSFPLASSDLGSEALENEFIMNSMHLFEIQKQMEEMASVGLDTSSFDDEAFNFEAAQDRCILRLIASCCNGDKLVRATELVKLLTLEKSMKGAIKLVTALKLPNLAERFSSILE 815
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g0517 815 Pfam Minichromosome loss protein, Mcl1, middle region 424 706 IPR022100 -
Dod09g0517 815 CDD WD40 27 295 - -
Dod09g0517 815 ProSiteProfiles Trp-Asp (WD) repeats profile. 233 274 IPR001680 GO:0005515
Dod09g0517 815 PANTHER WD REPEAT AND HMG-BOX DNA BINDING PROTEIN 1 815 - -
Dod09g0517 815 ProSiteProfiles Trp-Asp (WD) repeats profile. 141 182 IPR001680 GO:0005515
Dod09g0517 815 ProSitePatterns Trp-Asp (WD) repeats signature. 252 266 IPR019775 -
Dod09g0517 815 ProSiteProfiles Trp-Asp (WD) repeats profile. 57 98 IPR001680 GO:0005515
Dod09g0517 815 MobiDBLite consensus disorder prediction 335 400 - -
Dod09g0517 815 MobiDBLite consensus disorder prediction 357 374 - -
Dod09g0517 815 SMART WD40_4 50 89 IPR001680 GO:0005515
Dod09g0517 815 SMART WD40_4 176 222 IPR001680 GO:0005515
Dod09g0517 815 SMART WD40_4 268 306 IPR001680 GO:0005515
Dod09g0517 815 SMART WD40_4 225 265 IPR001680 GO:0005515
Dod09g0517 815 SMART WD40_4 134 173 IPR001680 GO:0005515
Dod09g0517 815 SMART WD40_4 92 131 IPR001680 GO:0005515
Dod09g0517 815 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 57 89 - -
Dod09g0517 815 Pfam WD domain, G-beta repeat 139 172 IPR001680 GO:0005515
Dod09g0517 815 Pfam WD domain, G-beta repeat 55 88 IPR001680 GO:0005515
Dod09g0517 815 Pfam WD domain, G-beta repeat 229 265 IPR001680 GO:0005515
Dod09g0517 815 Gene3D - 2 193 IPR015943 GO:0005515
Dod09g0517 815 MobiDBLite consensus disorder prediction 381 400 - -
Dod09g0517 815 SUPERFAMILY WD40 repeat-like 32 306 IPR036322 GO:0005515
Dod09g0517 815 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 141 178 - -
Dod09g0517 815 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 233 267 - -
Dod09g0517 815 Gene3D - 194 307 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g0517 Dod-Chr9 7973185 7977372 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod09g0517 58 268 U-box Gene Family AT2G33340 22.897 3.67e-11 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g0517 K11274 - gmx:100818807 1364.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod09g0517 09 7973185 7977372 Dod09g0517 09 7973185 7977372 ECH