Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g0504 ATGACATGTTGGCCTTGGGGGGTCAGCAGAACATTGAGAATCATGGTTTTGAGGAGCTGGGGTTTCCTGGGATGTTGGGGAAACAGTTGTCTGATGACCCTATTGGCGATGTTCAGAGCAGAAAGATGGATAGTGATCCTGGCTGCAGATTTGCTACTAGTCCTGTTGTGGCTGTCCCGGATGCATTCTCCGGCTAGAGAGGACTATGATTCCAAGATTTCGAACTCTTTGGGGGACTCTAATAATGGCCGTGATTCGCTTATTGACTTGAAGCTCGGTAGACTTTCCGATCAAGGGGATGCCGGCCGTCCAACATTTTCCGAAGGAGCTCCCATTGTGTCGTCGTCTGAGTCATCGGTGCCGCCCAAGCGGGTGCGAGCTTCAGGGGCGCAGTCTAAGACTGCCTACTGCCAAGTCTATGGCTGTAACAAGGATCTGAGTGCTTGCAAAGAGTACCACAAGAGGCACAAAGTTTGTGAGGTTCACTCCAAGACTTCCAAGGTTATAGTGAATGACATTGAACAGAGGTTTTGTCAGCAATGTAGTAGGTTTCATTTGCTGGCTGAATTTGATGATGGTAAGCGTAGCTGTCGTAAACGCCTTGCAGGCCATAATGAGCGGCGAAGAAAACCACAAGTTGGTATTCACTCTGGAAAGCCCGGGAGGTTGCTTCAGCCATATGGCGATAGCAGATTCCAGGGAACCATGATAACATCAGCATCATTTATCTGCCAAGAGATACTGCCCAGCGGGGTCTTATCTTCTGAGAGATATGGAACGAATGAATGGTGGAGATCTATAAAAGCTGAAGATGGCACCGGTTTTAGGCATCTTTCTTCTATTCCAACCACCAATGGACACCCTCAGTCAAGATCTCTATTTCCATCATATAATGAAAAGCAATTTCCCTTTCTTCATGAAAATGGTGCTACATCTGCTACAGGAAGCATCTTCTGCGAAAACAATAGTCAATATCCTGCCCTCGGGGGCCCAAATCCATCAGGGTCACAATCATTATTCCAGGACACATCCTTAGGAAGCGAGGACTTCAACGTTTTCGATACAGAATCGACTGTCCAGGGACTATCGGGAATTTCGGACACTGGTTGTGCTCTCTCTCTTCTGTCATCCCAATCCCAAAACTCTTCAAGCCAGTCATCAGGAATTCCCATGGCTCGACCCTTGGTCATTCCCAGCAGCCATGGCCATTACAGCATTAGTCAGGTCTCAGAAAAGATGATAGGAATAAGTTCGCAGGCTTCGAGTGGAGTCTCAGATAGGTTTCCATCTGAATTGAATCCTGCAGATGGAAGTCACCTTAGTCCTGTGTTGATATCAGACAATAATGAAATTGTCAACTTTGAAATGGCAGATGGGATTTTCCAAGGGTCGGATTTTGTGAATGTGAAAGATCGTCTCTCCAGTGAAGATGTCCCGACCATTGACTTGCTTCAACTGTCGTCACAGCTTCAGCGAGTCGAGCATCAGAGGCAGTCCTTGCAGGTGAAGCAAGAAAATGATTCTTCCTGCTCTCTCCGGATTACATAA 1548 0.4709 MTCWPWGVSRTLRIMVLRSWGFLGCWGNSCLMTLLAMFRAERWIVILAADLLLVLLWLSRMHSPAREDYDSKISNSLGDSNNGRDSLIDLKLGRLSDQGDAGRPTFSEGAPIVSSSESSVPPKRVRASGAQSKTAYCQVYGCNKDLSACKEYHKRHKVCEVHSKTSKVIVNDIEQRFCQQCSRFHLLAEFDDGKRSCRKRLAGHNERRRKPQVGIHSGKPGRLLQPYGDSRFQGTMITSASFICQEILPSGVLSSERYGTNEWWRSIKAEDGTGFRHLSSIPTTNGHPQSRSLFPSYNEKQFPFLHENGATSATGSIFCENNSQYPALGGPNPSGSQSLFQDTSLGSEDFNVFDTESTVQGLSGISDTGCALSLLSSQSQNSSSQSSGIPMARPLVIPSSHGHYSISQVSEKMIGISSQASSGVSDRFPSELNPADGSHLSPVLISDNNEIVNFEMADGIFQGSDFVNVKDRLSSEDVPTIDLLQLSSQLQRVEHQRQSLQVKQENDSSCSLRIT* 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g0504 515 Gene3D - 127 198 IPR036893 GO:0003677|GO:0005634
Dod09g0504 515 ProSiteProfiles Zinc finger SBP-type profile. 134 211 IPR004333 GO:0003677
Dod09g0504 515 SUPERFAMILY SBT domain 135 215 IPR036893 GO:0003677|GO:0005634
Dod09g0504 515 PANTHER 1 PROTEIN, PUTATIVE-RELATED 65 515 - -
Dod09g0504 515 Pfam SBP domain 137 210 IPR004333 GO:0003677
Dod09g0504 515 Coils Coil 483 503 - -
Dod09g0504 515 MobiDBLite consensus disorder prediction 95 127 - -
Dod09g0504 515 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 65 515 IPR044817 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g0504 Dod-Chr9 7664761 7670096 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod09g0504 88 253 SBP-box Gene Family AT1G69170 52.410 1.26e-47 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Dod09g0504 SBP 7.4e-30 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g1813 05 43608402 43611464 Dod09g0504 09 7664761 7670096 ECH
Dod09g0504 09 7664761 7670096 Dod09g0504 09 7664761 7670096 ECH