Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g0485 ATGGCTTTCCTTGGTACAGTTGGGAATATACTAAGGCAAGCGACTAGTAGAAGGCTCGGCTCAGGGTTATGCTCATCCCCATCCATTTTCCAAGCTGTGCGATGCATGTCAAATGCTCCAAGCACAAAGCTTTTCGTAGGAGGTGTTTCATATTCTACGGATGAGCAAAGTTTGAGGGAAGTTTTTGCAAAATATGGTCAAGTTGTTGATGCACGGATAATCATGGACCGTGAAACTGGTAGATCTAGAGGATTTGCTTTTATTACTTACAGCTTGGTTGAGGAGGCATCAAGTGCCATTCAGGCATTGGATGGACAGGATCTGCATGGTCGCCAGGTTAAGGTAAATTTTGCTAATGAAAGGCCTCGTGGATTTGGTGGTTCTTATGACAACGCTCCCTACAGTGCTGGGGCTGGCTCTGGATATCCTGGTAGTTACGGTAACTCCCCATATGGAGCTGCTTCAAGTGGTGGGGGGTATGGTGTTGCTAGTGGTGCTTATGTTGGCACTGTTGCCAGCAGTTATGGCAGCAGAAGCAGTGGATATGGCGGAGATGGCTATGGATCAGATGGCAATTTTGGGGGCAGCAATAACCATGCTGCTGATGACAGTTTTGGTACTAGAAGTGCTGGTGGCAATTACAGTGGAAGTGGTATGAATTATGGGAATGATGGTAGCTTTGCAACTGGAAACACTTACGGCAGTGGAGCTAGTGGTGCTTATGGTGGTAACGGTGGGAGTTATGGTGGTGCTGGGAATGGTGGAGGAAATGATATTGGTAACTATGGTAGTGCTACTAATGGTGGAGGCTATGGCAGCTACAGCTCCAGCTTCGGCAGGAGTGATAATTATGGCAGTTCTGCTGGATTTGGTGGCAGTGATAATTATGCTGGTGCTGCGTATGGCAGCAGCGGCAGTTTTTCCGGTAGTCAATACAATGGAAATGGCGATGCAAGTACTGGCAGCGATTTTGGTGGTGGTTATGATGCTGGTTCTGCTTAA 1002 0.4741 MAFLGTVGNILRQATSRRLGSGLCSSPSIFQAVRCMSNAPSTKLFVGGVSYSTDEQSLREVFAKYGQVVDARIIMDRETGRSRGFAFITYSLVEEASSAIQALDGQDLHGRQVKVNFANERPRGFGGSYDNAPYSAGAGSGYPGSYGNSPYGAASSGGGYGVASGAYVGTVASSYGSRSSGYGGDGYGSDGNFGGSNNHAADDSFGTRSAGGNYSGSGMNYGNDGSFATGNTYGSGASGAYGGNGGSYGGAGNGGGNDIGNYGSATNGGGYGSYSSSFGRSDNYGSSAGFGGSDNYAGAAYGSSGSFSGSQYNGNGDASTGSDFGGGYDAGSA* 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g0485 333 MobiDBLite consensus disorder prediction 311 333 - -
Dod09g0485 333 SMART rrm1_1 43 116 IPR000504 GO:0003723
Dod09g0485 333 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 44 114 IPR000504 GO:0003723
Dod09g0485 333 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 1 234 - -
Dod09g0485 333 SMART rrm2_1 43 116 IPR003954 GO:0003676
Dod09g0485 333 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN 3, MITOCHONDRIAL 1 234 - -
Dod09g0485 333 Gene3D - 28 132 IPR012677 -
Dod09g0485 333 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 42 120 IPR000504 GO:0003723
Dod09g0485 333 SUPERFAMILY RNA-binding domain, RBD 38 149 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g0485 Dod-Chr9 7267805 7270443 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod09g0485 44 153 Eukaryotic Initiation Factors Gene Family AT3G16380 33.613 1.96e-10 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g0485 K12741 - ccaj:109815980 216.083
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod09g0485 09 7267805 7270443 Dod09g0485 09 7267805 7270443 ECH