Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g0479 ATGGCCAAAACTCTTTTGCTAGTAATCATATTCTTCATATCCTTGTTCTCTATAGCTCCTCCAGCCCTTTCAACCGATAACGTTGTCTCCAATGCAATTGATTATTGGTGCAATAAAACCCCACATCCACAAACATGCAAACACTATGCCACAAATTACCATCACCCAAATGGTATCCCAAAAAATGCATCTCAATTCAAGAAGCTCATCCTCACAATTGCCATGGACCAATCTCTAAAAGCAGAGAGTCACAACAAGTGGCTAGGGTCCAAGTGCAAAAGCAAGCAAGAAAAGCAAGCATGGGAAGATTGTTTGAAGCTATACCAAGACACCATCACACTCCTAAACCAAACACTTGACACTACCACACACACCACAGGCCATGATCTCCAAACATGGCTCAGCACAGCTCTAACAAACCTCGACACGTGTCGAACCGGGTTTGTAGAGCTTGGAGTTAGCAACAATGTTCTGCCCCTCATCCAAAACAAGAACATCTCCGAGATCATAAGCAACACTTTGGCTCTCAACAATGCCTCATCATCGCTTTTTCCAGAGACTAATAGTTATGACGAGAATGGGTTCCCAAAGTGGGTCTCATCGGGTGATAGGAAGCTTCTAGAATCATTATCCCCAGTTCCTGATGTTGTGGTGGCAAAAGATGGTTCAGGGAACTTTAGGACTATTAAGGAAGCTTTGCAAGCAGTTCCTTCCAAGAGAACAAAGAGGTTTGTGATATATGTGAAGCCTGGTGAGTACAATGAGAACCTTGAGATTGGGAAGAGTTTGAAGAATGTTATGCTGTATAGTGATAGCATGAGGCTCACGGTCATAACGGGTAGCCGAAGTGTTGGAGGAGGTTCTACCACTTTTAATTCAGCAACTGTTGAGAAGTATGAAAGAGAAGCCAAGAGGTATTGGGATGTCTTCTACATGCGCCACAAGGACAAGGTTGATCGGCACTACTTAGATAAGGAATGGGGCAATTACTCTTCAGGAGGAGGAAGAAAAGTGATTTTGGAGGTTGCTTGTGGAGCTGGAAATACTATCTTTCCTGTGATAGCATCATATCCAGATGCTTTTGTTTATGCATGCAATTTCTCACCGCAAGCTATTGAGTTGGTTAAGGTCAGAAATCTCCTCTTTGTAAATTTTCTCTTCGTTCATCATCTCCTTACACTAAGCTTAGACATGAAGACTTCCAAGGACTCCCATGTTAGTGCTTTTGTCTGTGATTTGACAGCTGATGATCTGTGCAAAGAGATTCTTCCATCATCAGTTGGTATTGTTACCATGATATTTATGTTATCTGCAGTGTCCCCAGAAAAGATGCCTCTAGTATTGCAAAATGTTAGAAAAGTTATCAAGGCAAGAAATTGTTTTCTGGCCATGTTATCTTGTAACTTCTTTCATATTAATTTCTTCCTGTTTAATGTAAATACTTTATTTTCTATCCGGCGTGCTTACTACTTTTCGAATGAGTTCTTGACAAATTTATTCAAAGAAAATGGTTTTGATGTCGACAAACTTCATGTATTCTGCAAACAAGTTGAGAACCGTAACTTACCCTTTATAATTCTCCTTCTTTGTTTGGTGTTTCTCAGGCGTTGGGTCCAAGCTGTATTTCGTGTTTCAGATGATTTGAACTCTTCCGGTAAAGAAGCTGAGGCCAACCATCTTGGTGGTAATAATATTGATATGGAAACCAAGCAAAACAATTTGAATGGTAATTTAAATGACTCTGCAATTGACTTGTCCAAAGGTGTGGCAGCCGACATGTTTGGAATCTCACCTTCCAATGAGTATGAGATTGTTGAGATCAACCTTGGAGGCAGGAATTTCAAGATTAGTGTACTTTCAAAAGAGTACCAACATACCTGCAAATCAACTGGTTTAATGCTTTGGGAATCGGCTCGATTGATGGCTTCCGTCCTCGGGGAAAATCCCGATATTATTGTAGCAGGGAAAAGGGTCTTGGAGTTGGGGAGTGGCTGTGGGGGAATCTGCTCTATGATTGCTGCTAAATATGCTGACCTAGGAGTGGCTACTGATGGAGATGCTCCTGCCCTTGACCTCCTTTCCAAAAATGTTGCATCTAATCTTGAGCGACCATTGCTGACTAAACTAATCACAAAGAGACTGGAGTGGGGAAATAAGGATCACATAGAAGCCATAAAGGAAGTGATCAGTGATAAAGGGTATGATGTCATCGTTGGCACAGATGTAACATACATTCCTGAAGCTATATTGCCTTTGGTTGCAACTGCAGAAGGACTAATTGCACCCAGTGGAAGCGGCAGAAATAATGTGCCTGCACTGAATTCTTTGCCATATATTCCGCCGCGTAGATGA 2352 0.4162 MAKTLLLVIIFFISLFSIAPPALSTDNVVSNAIDYWCNKTPHPQTCKHYATNYHHPNGIPKNASQFKKLILTIAMDQSLKAESHNKWLGSKCKSKQEKQAWEDCLKLYQDTITLLNQTLDTTTHTTGHDLQTWLSTALTNLDTCRTGFVELGVSNNVLPLIQNKNISEIISNTLALNNASSSLFPETNSYDENGFPKWVSSGDRKLLESLSPVPDVVVAKDGSGNFRTIKEALQAVPSKRTKRFVIYVKPGEYNENLEIGKSLKNVMLYSDSMRLTVITGSRSVGGGSTTFNSATVEKYEREAKRYWDVFYMRHKDKVDRHYLDKEWGNYSSGGGRKVILEVACGAGNTIFPVIASYPDAFVYACNFSPQAIELVKVRNLLFVNFLFVHHLLTLSLDMKTSKDSHVSAFVCDLTADDLCKEILPSSVGIVTMIFMLSAVSPEKMPLVLQNVRKVIKARNCFLAMLSCNFFHINFFLFNVNTLFSIRRAYYFSNEFLTNLFKENGFDVDKLHVFCKQVENRNLPFIILLLCLVFLRRWVQAVFRVSDDLNSSGKEAEANHLGGNNIDMETKQNNLNGNLNDSAIDLSKGVAADMFGISPSNEYEIVEINLGGRNFKISVLSKEYQHTCKSTGLMLWESARLMASVLGENPDIIVAGKRVLELGSGCGGICSMIAAKYADLGVATDGDAPALDLLSKNVASNLERPLLTKLITKRLEWGNKDHIEAIKEVISDKGYDVIVGTDVTYIPEAILPLVATAEGLIAPSGSGRNNVPALNSLPYIPPRR* 784
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g0479 783 PANTHER PECTINESTERASE 8 296 - -
Dod09g0479 783 SUPERFAMILY Pectin lyase-like 214 297 IPR011050 -
Dod09g0479 783 Gene3D Vaccinia Virus protein VP39 331 524 IPR029063 -
Dod09g0479 783 CDD AdoMet_MTases 339 414 - -
Dod09g0479 783 Gene3D - 211 314 IPR012334 -
Dod09g0479 783 CDD PMEI-like_3 36 179 - -
Dod09g0479 783 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 631 764 IPR029063 -
Dod09g0479 783 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 31 179 IPR035513 -
Dod09g0479 783 CDD AdoMet_MTases 657 764 - -
Dod09g0479 783 PANTHER PECTINESTERASE 8 296 - -
Dod09g0479 783 SMART PMEI_2 28 176 IPR006501 GO:0004857
Dod09g0479 783 Pfam Plant invertase/pectin methylesterase inhibitor 32 176 IPR006501 GO:0004857
Dod09g0479 783 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 298 513 IPR029063 -
Dod09g0479 783 Pfam Pectinesterase 215 297 IPR000070 GO:0030599|GO:0042545
Dod09g0479 783 Gene3D Vaccinia Virus protein VP39 590 770 IPR029063 -
Dod09g0479 783 Pfam Lysine methyltransferase 624 763 IPR019410 -
Dod09g0479 783 Gene3D Invertase/pectin methylesterase inhibitor family protein 27 179 IPR035513 -
Dod09g0479 783 TIGRFAM PME_inhib: pectinesterase inhibitor domain 4 178 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g0479 Dod-Chr9 7189411 7198264 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod09g0479 33 296 Carbohydrate Esterase AT2G45220 52.075 2.19e-81 268
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g0479 K00599 - gmx:100789229 613.224