Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g0462 ATGAATCCAATGGAAGAAGATCAAGATCAACACAACAAGAAGCACTTGTGCAAGTTCTGCAGCAAGAGCTTCCCCTGTGGTAGATCCTTGGGGGGTCACATGAGGTCTCACGTGATCAATGCCTCAGCTGACACAGATGAGAATAAGCTTCTTGTTGCTGCAACAACTGGTCCTGAAGCTGGTTATGGTCTCAGAGAGAACCCAAAGAAGACTTGGAGGCTCACTAGTGAAGACACTTTATTCTTGGACAAGTTGTGCAGAGAGTGCGGTAAAGGCTTTCCCTCATGGAAAGCACTATTTGGTCACATGAAGTGTCATTCTGAGAAAGAAGGAGTTCCCAATAATAATAATACTAATAATAGTTTGGATGATCTAGTTCAAGATTCATCATGGACTAATAATAATGATGATCATGCTGGCATGAAGCTTTTTGTGGATAGCCAATCTGACAATGAAGCTACTGCCCCAAATAGAAGGAAGAGATCCGAGAGGAGGACAAGGTACATGGCACTACCATCAACATCTTCTTTGTCTTTTGCTGCTGTTGCTGCCAATCCTTCTTCCTCTTCTGTTTCTGAGGATGATGAGCAGGAGCAAGAAGATGTTGCCATGAGCTTAATGATGCTTAGCAGGGATGTTGGAAATTGGGGTGGCCTCAATTCTGTTGCTGAGTACTCTGATAACCTCAAAAACAACAGAAACAACAACTTCTACTACTCTTTGTTGCACTTTGATGCTCCATCTTCAGTAAGAACCAATATGGTTTCTAAGATTGAGGGGAAGAAGCTTGTTGTCACAACTGGTTCTGAGTTGACAAAAAAGCTGAAATCAGCAAGAGCTCTCACGAACAAGAGAGGCAAGTTTGAGTGTACAACTTGCAACAAAACCTTCCACTCCTACCAAGCTCTTGGGGGTCATAGAGCAAGCCACAAGAAGATCAAGGGATGTTTTGCTTCAAGGATTGAGGGTAGTGAAAACAGCATTGAATTTGAAGCAGACCCCGCCAGCACTGACCCAACAACAGAGAGCAGCAAGCACATGAAGAACAGTGACAACAATGAATATCTGGTGGAACATGAAGTTGTTGGTACTAGTGGCTTTGACAGAGAGTCCAAGAAGAGCAAAGGGCATCATGAGTGCCCAATTTGCCTCAAGGTTTTCCCATCAGGGCAGGCCTTAGGTGGCCACAAGAGATCACATATGGCTGGTGGTGGGTCTGAGAGTAAAAAATGTCCAAGTCAAACAATTGTACTTCATGAATCAGTCCCAGAAATTAGGGACTTTCTTGATCTCAATCTTCCTGCAGCTGCAACTGAGGAAGAAAGAAAAAGCAACAATAGCCATGTTGATGAGCCTTTCAGTCCTTGGACTCATGTCTTCTTTGAGCTTGGAAAATGGGAGTTGTTGGGAGAGGCAGAGAGGGAGGTTTTGGTCAGTATGGGGGAGTGGAGTTCATGTTTTACTCGTCTTGTAGCAGCTGGCAGTGGCACACCGTGTTATGCTCTGGCCTTGTCAACTAGTACAACGAACTAA 1533 0.4429 MNPMEEDQDQHNKKHLCKFCSKSFPCGRSLGGHMRSHVINASADTDENKLLVAATTGPEAGYGLRENPKKTWRLTSEDTLFLDKLCRECGKGFPSWKALFGHMKCHSEKEGVPNNNNTNNSLDDLVQDSSWTNNNDDHAGMKLFVDSQSDNEATAPNRRKRSERRTRYMALPSTSSLSFAAVAANPSSSSVSEDDEQEQEDVAMSLMMLSRDVGNWGGLNSVAEYSDNLKNNRNNNFYYSLLHFDAPSSVRTNMVSKIEGKKLVVTTGSELTKKLKSARALTNKRGKFECTTCNKTFHSYQALGGHRASHKKIKGCFASRIEGSENSIEFEADPASTDPTTESSKHMKNSDNNEYLVEHEVVGTSGFDRESKKSKGHHECPICLKVFPSGQALGGHKRSHMAGGGSESKKCPSQTIVLHESVPEIRDFLDLNLPAAATEEERKSNNSHVDEPFSPWTHVFFELGKWELLGEAEREVLVSMGEWSSCFTRLVAAGSGTPCYALALSTSTTN* 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g0462 510 MobiDBLite consensus disorder prediction 110 137 - -
Dod09g0462 510 ProSiteProfiles Zinc finger C2H2 type domain profile. 15 37 IPR013087 -
Dod09g0462 510 SUPERFAMILY beta-beta-alpha zinc fingers 85 310 IPR036236 -
Dod09g0462 510 SUPERFAMILY beta-beta-alpha zinc fingers 11 38 IPR036236 -
Dod09g0462 510 MobiDBLite consensus disorder prediction 110 167 - -
Dod09g0462 510 PANTHER C2H2-TYPE ZINC FINGER PROTEIN 4 237 - -
Dod09g0462 510 ProSiteProfiles Zinc finger C2H2 type domain profile. 288 315 IPR013087 -
Dod09g0462 510 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 4 237 - -
Dod09g0462 510 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 273 457 - -
Dod09g0462 510 Pfam C2H2-type zinc finger 86 108 - -
Dod09g0462 510 Pfam C2H2-type zinc finger 15 37 - -
Dod09g0462 510 Pfam C2H2-type zinc finger 377 402 - -
Dod09g0462 510 Pfam C2H2-type zinc finger 288 312 - -
Dod09g0462 510 ProSitePatterns Zinc finger C2H2 type domain signature. 17 37 IPR013087 -
Dod09g0462 510 SMART c2h2final6 15 37 IPR013087 -
Dod09g0462 510 SMART c2h2final6 378 400 IPR013087 -
Dod09g0462 510 SMART c2h2final6 84 106 IPR013087 -
Dod09g0462 510 SMART c2h2final6 288 310 IPR013087 -
Dod09g0462 510 Gene3D Classic Zinc Finger 285 400 - -
Dod09g0462 510 MobiDBLite consensus disorder prediction 330 350 - -
Dod09g0462 510 ProSitePatterns Zinc finger C2H2 type domain signature. 290 310 IPR013087 -
Dod09g0462 510 PANTHER C2H2-TYPE ZINC FINGER PROTEIN 273 457 - -
Dod09g0462 510 ProSitePatterns Zinc finger C2H2 type domain signature. 86 106 IPR013087 -
Dod09g0462 510 Gene3D Classic Zinc Finger 2 110 - -
Dod09g0462 510 ProSiteProfiles Zinc finger C2H2 type domain profile. 84 111 IPR013087 -
Dod09g0462 510 ProSiteProfiles Zinc finger C2H2 type domain profile. 378 400 IPR013087 -
Dod09g0462 510 ProSitePatterns Zinc finger C2H2 type domain signature. 380 400 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g0462 Dod-Chr9 6787532 6791291 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod09g0462 372 439 C2H2 Transcription Factor Family AT1G26610 53.623 1.63e-13 70.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Dod09g0462 zf-C2H2_6 3.7e-13 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g0462 - - rcn:112179589 380.178