Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g0460 ATGTACCCACAGCAACAGCAAGTAGTTCCCTTCGCCAACTACCACCAACAGCAACAACAACAACAACAACAACAACAGTACTATTCTTCTTCAAACCCATTCCTGTGGGCATCTTCTTCTTCTTCTCTCCCCTCAGATTCTTCTTCTTCTCTTCACCCTCCAGGCACCGAAACTGTTTCGAATTCCAACGTGTACTATCCAAATTCAACCCTTTCCGCTTCTGCTTCTTCTTATGGCGCCCAACCATCGGATTCTCAGAATTGGGTCGTCAATTATGATGCTGCTGTTGGATCATCGTCGAATGAGACATCAGTAGTACCTTCAAGTTTGCCTTCGACGTGGAATGGCACATGGCTACAACAACATTTCACTAATGCTGCTACAGCAGTGTTGCCTAACCAAATTAACGTCACCAAATCAATGAGATGTGAGGTCTGCAAAATTGATTGTAATAGCAAAGACGTTTATGAAACGCATATATCGGGAAAGAAACACCAGAAGAATTTGCAGCTACAGGCTAATCCCACCAATACAACATTATCAGGACCCTCTCAAGCAAATGTACAGAGTCAAACTAGTGGTACCCAAGGACTAGAGTTAATCGGTCCTGCAGAGTCTAAGAAACGGAAGTTTTTGAATGGTGGCACTCCCGTTGATTCCATAAAGGTTTGCTCAATATGCAACATTGTGTGCAATAGTCAAGAAGTATATAGCAAGCATCTAGCTGGGAAAAAGCATGCTGCTCAGGTTGCCCTGATGTCTAATAATGGGATCGGTCCATATATTGCGGCATTTAAGCGTGAAGGTACTGGTCCTTGGAAAAAAGCTCCAAAGAAAGTCAAGGTTGCGCAACCTGCCTGGTGTGATGTTTGCAAGGTTAACTGTAACAGCTCGGATATGTATATTGCACACTTAGCTGGTAAGAAACACCTGAAGAACTTGGAGAAACTTTCAAAACCAAAAAATGACACTGCTACTGGTACTGCGACAGCAAATGCTTTGCAAGTGGCTGCGAGTCCAATGATTGGGCCACAGGAAAAGCCGGGTACTGATAAGCCGAAACCCCAGAAGGCACCGGAAATGGGTATCGAGGCAAAGAAACGTAAAGTTGTAGACGGTGGAGCTGCAGCAGGTGATGTTAGATTGTGCACTCTTTGCAATGTGGTGTGCAACAGCCAGGTCGTTTTCAATGATCACCTTGCTGGGCATAAACATGCTGCTATGGTGAAGAAGCAGGCAGAGTCAAGAGGGGAAACTACTGCCTGA 1266 0.4487 MYPQQQQVVPFANYHQQQQQQQQQQQYYSSSNPFLWASSSSSLPSDSSSSLHPPGTETVSNSNVYYPNSTLSASASSYGAQPSDSQNWVVNYDAAVGSSSNETSVVPSSLPSTWNGTWLQQHFTNAATAVLPNQINVTKSMRCEVCKIDCNSKDVYETHISGKKHQKNLQLQANPTNTTLSGPSQANVQSQTSGTQGLELIGPAESKKRKFLNGGTPVDSIKVCSICNIVCNSQEVYSKHLAGKKHAAQVALMSNNGIGPYIAAFKREGTGPWKKAPKKVKVAQPAWCDVCKVNCNSSDMYIAHLAGKKHLKNLEKLSKPKNDTATGTATANALQVAASPMIGPQEKPGTDKPKPQKAPEMGIEAKKRKVVDGGAAAGDVRLCTLCNVVCNSQVVFNDHLAGHKHAAMVKKQAESRGETTA* 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g0460 421 SUPERFAMILY beta-beta-alpha zinc fingers 137 171 IPR036236 -
Dod09g0460 421 Gene3D Classic Zinc Finger 274 321 - -
Dod09g0460 421 MobiDBLite consensus disorder prediction 350 366 - -
Dod09g0460 421 PANTHER - 264 416 - -
Dod09g0460 421 PANTHER - 15 255 - -
Dod09g0460 421 MobiDBLite consensus disorder prediction 38 63 - -
Dod09g0460 421 PANTHER ZINC FINGER RNA-BINDING PROTEIN 264 416 - -
Dod09g0460 421 PANTHER ZINC FINGER RNA-BINDING PROTEIN 15 255 - -
Dod09g0460 421 SMART ZnF_U1_5 219 253 IPR003604 GO:0003676|GO:0008270
Dod09g0460 421 SMART ZnF_U1_5 138 172 IPR003604 GO:0003676|GO:0008270
Dod09g0460 421 SMART ZnF_U1_5 283 317 IPR003604 GO:0003676|GO:0008270
Dod09g0460 421 SMART ZnF_U1_5 378 412 IPR003604 GO:0003676|GO:0008270
Dod09g0460 421 MobiDBLite consensus disorder prediction 165 195 - -
Dod09g0460 421 SUPERFAMILY beta-beta-alpha zinc fingers 217 252 IPR036236 -
Dod09g0460 421 SMART c2h2final6 222 246 IPR013087 -
Dod09g0460 421 SMART c2h2final6 381 403 IPR013087 -
Dod09g0460 421 SMART c2h2final6 141 165 IPR013087 -
Dod09g0460 421 SMART c2h2final6 286 310 IPR013087 -
Dod09g0460 421 SUPERFAMILY beta-beta-alpha zinc fingers 282 317 IPR036236 -
Dod09g0460 421 MobiDBLite consensus disorder prediction 163 195 - -
Dod09g0460 421 Pfam Zinc-finger of C2H2 type 383 405 - -
Dod09g0460 421 Pfam Zinc-finger of C2H2 type 143 165 - -
Dod09g0460 421 Pfam Zinc-finger of C2H2 type 287 310 - -
Dod09g0460 421 Pfam Zinc-finger of C2H2 type 223 246 - -
Dod09g0460 421 SUPERFAMILY beta-beta-alpha zinc fingers 379 412 IPR036236 -
Dod09g0460 421 MobiDBLite consensus disorder prediction 340 366 - -
Dod09g0460 421 Gene3D Classic Zinc Finger 128 173 - -
Dod09g0460 421 Gene3D Classic Zinc Finger 364 413 - -
Dod09g0460 421 Gene3D Classic Zinc Finger 204 253 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g0460 Dod-Chr9 6758309 6761770 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod09g0460 215 409 C2H2 Transcription Factor Family AT5G61190 31.122 2.74e-21 94.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g0460 - - aprc:113848135 499.204