Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g0456 ATGAATAATCTGTTTCTTATATTATTTGGATTATGGTTCTATATTTCTTGGTTTTCTGTTCTTTGTTTACCTTTAGTTATCTTTTTCTTTTTGGTTATTTTAACTGTGTTCTTATATCTTATGGTGCATTTCTTCCTAGGTGCTCATAGGCCATATGATATTTTTCATCAGATAAATGTGTTATGGCCTGGCTTGTTGGGGAAGACTAAACATGAGTTTGCAAAAACTTATTGTGATTTAAAATATTTCAAGGGCATCCAAGGAAATTATTTTGCGGATTATTCAAAGGGCATTCGGTTGGAGGAGTTGAATGTGTTACTAAAGCAAACTGTTATGATTAGGCGTTTGAAGGAACATGTGTTGCAACAGTTACCTCCAAAACGGCGGCAAATTATAAGACTGTTGCTGAAGAGATCAGATATAGTTTCCGCAAAAAAAGCAGTTGGTGTATTGAAGACTGATGCCCCTGAAAGTGCAAGTGAAGACATGCCTCTCGAAAATTTGGATGAACCTGATGGAAAGCTTTCTTACCAGGAACTTGGAATTGCAAAGCTTTCTGGGTTTCGTGAATGGCTTTCCCTCCATCCACTCATTGCAGGATCTGAGAATTCTGCAAAGATGATAATATTTGCTCATCATCACAAAGTTCTTGATGGAGTACAGGAGTTTATATGTGAGAAAGGGATAGGTTTTGTGAGAATTGATGGAAATACTCTTGCTAGAGACAGGCAATCAGCAGTAGTGTCTTTTCGATCATCATCAGAGGTCAAAATTGCAATAATAGGTATTCTAGCAGCAGGTTTTGGACTTGATTTCTCAACAGCACGGGATGTTGTGTTCTTGGAGCTACCTCAGTGCCCAACTGTGATGCTTCAGGCTGAGGATAGAGCTCATCGACGGGGGCAAACAAATGCGGTTAATGTATACATATTCTGTGCAAAGGATACCTGGGATGAGTTGCATTGGAAAAATTTGAATAGAAGTTTGCACTGTGTTTCATCTACAACAGATGGAAAATATGATGCGAAGAAAGAGATAGAGGTTGAAGGTATTTCTTATTTAGACACATCGTTTAAAACTGATAGTAGTGATGAGCAATCTGCACCCAAAGAGGCATTAAGTGAAAGACCATTGGATAAGCAAACTTCCCCAGTAAATTCAAATGAATCAGAAGCAAATCAAGATGATAAATCCGATGGGAATGCTTCTGTTGACAATAACTCAATTTGTACTGCTAAAATTATGGATGATAATGTTTCCTGCCTCAAATTTGGTAAGGCTTCAGTTTTGGATGCAAATGTTGATCTAGATGTTGTTGATGCTGAAGAAAGATTGTCTGAAAAGAGTTTTGAAGACAAAGATCAAACAATAGAGTTGCACGACAAGAAATCAACCTCAACAGATGAAGCAGATGACAACCAGCCTGTTCAGCTTGAAACCAGTGGATATTGCTCTAATCAAGTTGATTCTCTGCGATTTGAGGTGAGCCCATACACTGGAAGGATCCACTTGTATTCTTGCATTTTGGGTACAGATATAAGACCTCGACCACTTTATGAAAATTTCCGACCTGAGGAACTTGAGTTGTTAAGTCCTGTTGCTGATGATGAGAAAAAGAAGATAGAGTTTGTATCTGCCAAGGACAATCCTGCTTATAGGCATGCTCTTCTGGAGTTTGCAAATGAATGGAAGAATTTGAGGCCAATTGAACGCAAGAAGTTACTTGGAAAACCATTACAACTTCCTTTGGCAGTTGAATTGTGCTATTTGAGTGAAAGCAATAACCACAATAACATGGGATTATTAAATGGTGGAAGTAAACGGCGTATGACACCATTGGTGGAGATTAGCCATCCTTTACCATCAGATGCTGTTTGGAGGAAGGTTTTTCTGCGAAGTGGCCATGGTAAGAAGGAAGAAGAATACACTCAAGGCTGGAGTCTGACAGAGGAACCACTCTGTAAACTTTGTCAAAAGCAGTGCATGGGTAACAATGCCAAGACACCTGAATTTTTTGAAGATCTTTTTTGTAACCTTGTCTGTTACGAAGAGTATCGCATGAGAACTAGCAACAGATTCCTTCGTCAGGAGCTTTTCCAAGTTGAACATGGTGTTTGCACAAATTGCCAATTGGACTGTCATCAGCTTGTTGAGCATATAAGACCTTTATCATTGGAAAGACGACGAGAGTACATTGAGAAAGTAGCACCAAAAGTTGCAGAGCGAAAGAAAATGTTTGAGAAGCTTGTCAATGATCCAAGTGAAGGCAATGCCTGGCATGCTGATCATATCATTCCTGTATATCAAGGCGGAGGTGAATGCAAACTGGAGAATATGAGAACTCTGTGTGTGGCCTGCCATTATGATGTTACCGCAGCGCAATGTGCCGAACGACGCAAAGCAAGAACAAATGCCAGGAAACAACTAAAATTGATAATGAATAACATGAAAAGGGGTCTGAAGGGTGCTACTAAGGAGGGTATACTTGAAGATGAGCTTTTAGTCAAGGTTCCTGGAAGTGCGTATTCTCTTGCTAATAGCTAA 2544 0.3935 MNNLFLILFGLWFYISWFSVLCLPLVIFFFLVILTVFLYLMVHFFLGAHRPYDIFHQINVLWPGLLGKTKHEFAKTYCDLKYFKGIQGNYFADYSKGIRLEELNVLLKQTVMIRRLKEHVLQQLPPKRRQIIRLLLKRSDIVSAKKAVGVLKTDAPESASEDMPLENLDEPDGKLSYQELGIAKLSGFREWLSLHPLIAGSENSAKMIIFAHHHKVLDGVQEFICEKGIGFVRIDGNTLARDRQSAVVSFRSSSEVKIAIIGILAAGFGLDFSTARDVVFLELPQCPTVMLQAEDRAHRRGQTNAVNVYIFCAKDTWDELHWKNLNRSLHCVSSTTDGKYDAKKEIEVEGISYLDTSFKTDSSDEQSAPKEALSERPLDKQTSPVNSNESEANQDDKSDGNASVDNNSICTAKIMDDNVSCLKFGKASVLDANVDLDVVDAEERLSEKSFEDKDQTIELHDKKSTSTDEADDNQPVQLETSGYCSNQVDSLRFEVSPYTGRIHLYSCILGTDIRPRPLYENFRPEELELLSPVADDEKKKIEFVSAKDNPAYRHALLEFANEWKNLRPIERKKLLGKPLQLPLAVELCYLSESNNHNNMGLLNGGSKRRMTPLVEISHPLPSDAVWRKVFLRSGHGKKEEEYTQGWSLTEEPLCKLCQKQCMGNNAKTPEFFEDLFCNLVCYEEYRMRTSNRFLRQELFQVEHGVCTNCQLDCHQLVEHIRPLSLERRREYIEKVAPKVAERKKMFEKLVNDPSEGNAWHADHIIPVYQGGGECKLENMRTLCVACHYDVTAAQCAERRKARTNARKQLKLIMNNMKRGLKGATKEGILEDELLVKVPGSAYSLANS* 848
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g0456 847 CDD HNHc 751 791 IPR003615 -
Dod09g0456 847 PANTHER DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 FAMILY MEMBER 49 814 - -
Dod09g0456 847 CDD SF2_C_SNF 183 312 - -
Dod09g0456 847 Gene3D - 108 401 IPR027417 -
Dod09g0456 847 SMART helicmild6 218 301 IPR001650 -
Dod09g0456 847 Pfam HNH endonuclease 757 788 IPR002711 GO:0003676|GO:0004519
Dod09g0456 847 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 193 352 IPR001650 -
Dod09g0456 847 MobiDBLite consensus disorder prediction 445 469 - -
Dod09g0456 847 Pfam Helicase conserved C-terminal domain 199 301 IPR001650 -
Dod09g0456 847 MobiDBLite consensus disorder prediction 445 479 - -
Dod09g0456 847 Gene3D - 682 817 - -
Dod09g0456 847 MobiDBLite consensus disorder prediction 358 403 - -
Dod09g0456 847 PANTHER DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 49 814 - -
Dod09g0456 847 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 119 354 IPR027417 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod09g0456 206 362 RAD5 or RAD16-like Gene Family AT1G61140 33.962 1.38e-14 76.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g0456 K25861 - gmx:100788690 1273.07