Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g0455 ATGTTGTCGCACTACACGCAGATTCAGGGTGGAGGGAGGGCGTGCGTGTACAAGCTGTGCGACTACCGCGCAGTCTTGAAGTGTCTGAAGGGTGCTGCTGCGGAGGTTGAGGTGGAGGAGATCCCCTGGGGGACCTTCAACGTGGTGGAGAGGATGTCGCATTCCTTTGTCTCCGGCCGGTGGAATCCGGTGAGGCCGGAGCATTTCACGGACGAGCAGGTCGACGAGCTGGTTGCCAAGCTGCCCAGCAGTCTGCTCCGTGCTTTGCTGCCTTTCCAGCTCGATGGGCTCCGCTTCGGCCTCAGAAGGGGCGGCAGGTGCCTCATTGCTGACGATATGGGCCTCGGGAAGACTCTGCAGGCTATTGCTATTGCGGGATGTTTCATGGATGAAGGTTCTGTACTTGTGGTGTGCCCTGCTGTTTTGCGTTTTTCGTGGGCAGAAGAATTGGAGCGGTGGCTTCCTAACTGTTTGCCTGCTGATGTTCATCTTGTTTTTGGTCATCAAGATAATCCTGTATACTTAACAAGATGCCCTAGAGTTGTGGTTATTTCTTATACCATGCTCCATCGTTTAAGGAAGAACATGCTTGAGCGTGAGTGGGCTCTCTTGATTGTTGATGAATCTCATCATGTGCGATGTACAAAGAAAGCAGAGCCAGGAGAGATAAAGGCTGTTCTTGATGTGGCAACAAAAGTCAAGCGTATAATTCTGCTATCAGGGACCCCTTCTTTGTCAAGGTTGTAG 747 0.5221 MLSHYTQIQGGGRACVYKLCDYRAVLKCLKGAAAEVEVEEIPWGTFNVVERMSHSFVSGRWNPVRPEHFTDEQVDELVAKLPSSLLRALLPFQLDGLRFGLRRGGRCLIADDMGLGKTLQAIAIAGCFMDEGSVLVVCPAVLRFSWAEELERWLPNCLPADVHLVFGHQDNPVYLTRCPRVVVISYTMLHRLRKNMLEREWALLIVDESHHVRCTKKAEPGEIKAVLDVATKVKRIILLSGTPSLSRL* 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g0455 248 Gene3D - 64 248 IPR038718 -
Dod09g0455 248 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 52 245 IPR027417 -
Dod09g0455 248 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 98 248 IPR014001 -
Dod09g0455 248 SMART ultradead3 85 247 IPR014001 -
Dod09g0455 248 Pfam SNF2-related domain 107 243 IPR000330 GO:0005524|GO:0140658
Dod09g0455 248 PANTHER DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 FAMILY MEMBER 1 247 - -
Dod09g0455 248 PANTHER DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 1 247 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g0455 Dod-Chr9 6694012 6697023 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Dod09g0455 SNF2_N 9.5e-18 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g0455 K25861 - csin:114309017 401.749