Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g0450 ATGGGTATGACTGAACATTTAGAGAAAAAGAAGGGAGTGGTAATCATGAGTCGTCAGTGCTTGGTGCCAAACTGGAATCTGAAACAACAGCAAAGACAACAACAAGTCGAAGTAGGGGAAGAGGGTAGCAGGTCCTCTCATGTGCACACCAACCACCAGAACTACCCTGAACCTGCCACCACCACCCTTCTTGGCCCCATGTCTAATTATGACGGGGTTACAGAATTGACATGGGAAAATGGCCAGCTATCCATGCATGGGCTTGGCGGGCTTCTCCCCACTTCTCAGGAAAAGCCCACATGGGTTAAGGCCCATGATACATTAGAGTCTATTGTTCAACAAGCCACATCATGCAGATCACAAAAATCAAAGTTCATAAGAGAAGAGCATGGTCATCCTCGGAGTGCAAGCTCAATTGCTGCATCCTCCGGGGAGCAATATCAATTGGTGCCAGCATTGACAAAGAAAAGATCACGTTCGGATTGTGATGAACACGGGAGAAATTTTAGCTGCAAGAATAATAACATGGTACAAGAGTGTGACCACCCTAGTGGTAGTGCTAGTGGTGGTGCCACGTTTTGTAGGGACAATGAAACAACAATGATGACATGGGCTTCTCTTGAATCTGGCCGGAGCTTCAAGGACAAAAATCTCGAGGAGGATTCAGCTTGTCACTGTGAATCGGAGATTCTGGGTAACCAAGATGATAGAGACACGAAAATAGAAACAGACCAAGACAATTTAACAAGACGACATCGAACTGCTGCCGTCCATAACCAGTCTGAGCGGAGGAGAAGAGATAGAATTAATCAGAAGATGAAAGCCTTGCAGAGGTTAGTGCCTAATGCAAGTAAGACTGATAAAGCATCAATGTTAGAGGAGGTGATCAGCTACTTAAAACAGCTGCAAGCACAGATCCAGATGATGAGTATGACAAGCATGCCACAGATGATGGTGCCTTTAGCTATGCAACAACAGCTTCAAATGTCTATGCTAGCAAGAATGCCTGGACTTGGCCTTGGAATGGGAATGGGAATGGTCAACATAAACAACATGGCTCCATACACAGCAGCACCAAGGCCATTCCCACAACTCATGCAACCAACAACAGTAGGAGGAACTCCTGCCACTAGCCCTATATTTGTTGCACCACCTGCTTCTTTTGTGATGCCTTCATTTATTCAAGCACCTCCAAAGCCACTGCCTGCATCTGCATCAGGCACCAATGCCTCAATTCCTTTGCCTGATCCATTTAGCACTACTGCTTTTGGCACAATCGGCTAA 1284 0.4603 MGMTEHLEKKKGVVIMSRQCLVPNWNLKQQQRQQQVEVGEEGSRSSHVHTNHQNYPEPATTTLLGPMSNYDGVTELTWENGQLSMHGLGGLLPTSQEKPTWVKAHDTLESIVQQATSCRSQKSKFIREEHGHPRSASSIAASSGEQYQLVPALTKKRSRSDCDEHGRNFSCKNNNMVQECDHPSGSASGGATFCRDNETTMMTWASLESGRSFKDKNLEEDSACHCESEILGNQDDRDTKIETDQDNLTRRHRTAAVHNQSERRRRDRINQKMKALQRLVPNASKTDKASMLEEVISYLKQLQAQIQMMSMTSMPQMMVPLAMQQQLQMSMLARMPGLGLGMGMGMVNINNMAPYTAAPRPFPQLMQPTTVGGTPATSPIFVAPPASFVMPSFIQAPPKPLPASASGTNASIPLPDPFSTTAFGTIG* 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g0450 427 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 251 313 IPR036638 GO:0046983
Dod09g0450 427 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 253 302 IPR011598 GO:0046983
Dod09g0450 427 Gene3D - 249 313 IPR036638 GO:0046983
Dod09g0450 427 SMART finulus 259 308 IPR011598 GO:0046983
Dod09g0450 427 MobiDBLite consensus disorder prediction 32 59 - -
Dod09g0450 427 PANTHER TRANSCRIPTION FACTOR PIF7 19 422 - -
Dod09g0450 427 Coils Coil 259 279 - -
Dod09g0450 427 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 19 422 IPR031066 -
Dod09g0450 427 CDD bHLH_AtPIF_like 253 315 - -
Dod09g0450 427 Pfam Helix-loop-helix DNA-binding domain 257 303 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g0450 Dod-Chr9 6656317 6661986 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod09g0450 54 315 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00050 39.273 4.34e-40 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dod09g0450 HLH 4.4e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g0450 - - gmx:102667566 358.607