Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g0445 ATGCCAAGAACTAAAGAATCAAGCAATGGGAACATACAATTGGCATTGGCAAATGGTTACTGTCACGCTGTTTTCACCTTGAAATGGACAGAAATCACTGCAGAGGAAAACTCTTCAGCGCAGGAGATGGCCGGTACTGCTAGGAAGGAGGGGAATACAATGCCAGTGGAGATTGCAATCCAGAGAGAGCTGGCATATAGGAGGAAGGCTAAATCAACAAGTCTAGCTTCCAAGCCAATGGCATTGCCAGGTCCAAATTCAAGGCAATCAAGTCCATGCTTCACAGGAACCAAGAGAAAGGAACCAACAAGCAGTGCTCATCATCCACCTCAGAAACATCACCAACCATTTCATGGCAATCTCATCAGTCACAAAGCTAAGGCAGATAATGTACACTGCAAAATCTGCCAAGTACCTTGCTCGAGTCCATCCAATCTCGAGCAACATTTGAGAGGTCACAAGCACAGGGAAAAATTACTAGAGCTGGAATTTGGCAAGAAAGGTGGAAGAGAGTGTAGAAGCAATCAGAGGCAGTGGTGTGAAACTTGTAAAGTTTCATGCATGAATGAAGACTTGCTCAAGCTGCACTTTCAAGGCAAGAAGCATAAGGCTCAATTACTGAAGTTGGAAACTAAGCAGCAAGGTGGGGAGGATCCAAATAGGAAAAAATGGTGTGAACTCTGCAAATTATGGTGCATTGGTGAGTTTGCTTTCAGGCAGCATCTTGAAGGTAGAAAGCACATTATTCAACTGCATGCTATGAAGAAAGAAAAAGAGACAGGCATAGAACAGAAAAATATACATTGA 807 0.4337 MPRTKESSNGNIQLALANGYCHAVFTLKWTEITAEENSSAQEMAGTARKEGNTMPVEIAIQRELAYRRKAKSTSLASKPMALPGPNSRQSSPCFTGTKRKEPTSSAHHPPQKHHQPFHGNLISHKAKADNVHCKICQVPCSSPSNLEQHLRGHKHREKLLELEFGKKGGRECRSNQRQWCETCKVSCMNEDLLKLHFQGKKHKAQLLKLETKQQGGEDPNRKKWCELCKLWCIGEFAFRQHLEGRKHIIQLHAMKKEKETGIEQKNIH* 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g0445 268 SUPERFAMILY beta-beta-alpha zinc fingers 126 161 IPR036236 -
Dod09g0445 268 SUPERFAMILY beta-beta-alpha zinc fingers 213 256 IPR036236 -
Dod09g0445 268 PANTHER ZINC FINGER RNA-BINDING PROTEIN 69 256 - -
Dod09g0445 268 Gene3D Classic Zinc Finger 170 208 - -
Dod09g0445 268 SMART c2h2final6 223 247 IPR013087 -
Dod09g0445 268 SMART c2h2final6 131 153 IPR013087 -
Dod09g0445 268 SMART c2h2final6 178 202 IPR013087 -
Dod09g0445 268 MobiDBLite consensus disorder prediction 79 100 - -
Dod09g0445 268 SUPERFAMILY beta-beta-alpha zinc fingers 176 213 IPR036236 -
Dod09g0445 268 PANTHER ZINC FINGER RNA-BINDING PROTEIN-LIKE 69 256 - -
Dod09g0445 268 Pfam Zinc-finger of C2H2 type 224 247 - -
Dod09g0445 268 Pfam Zinc-finger of C2H2 type 132 155 - -
Dod09g0445 268 Pfam Zinc-finger of C2H2 type 179 202 - -
Dod09g0445 268 MobiDBLite consensus disorder prediction 70 118 - -
Dod09g0445 268 ProSitePatterns Zinc finger C2H2 type domain signature. 133 155 IPR013087 -
Dod09g0445 268 Gene3D Classic Zinc Finger 123 169 - -
Dod09g0445 268 Gene3D Classic Zinc Finger 209 263 - -
Dod09g0445 268 SMART ZnF_U1_5 220 254 IPR003604 GO:0003676|GO:0008270
Dod09g0445 268 SMART ZnF_U1_5 175 209 IPR003604 GO:0003676|GO:0008270
Dod09g0445 268 SMART ZnF_U1_5 128 162 IPR003604 GO:0003676|GO:0008270
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod09g0445 85 247 C2H2 Transcription Factor Family AT5G61190 22.967 4.10e-06 46.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Dod09g0445 zf-met 8.7e-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g0445 - - aip:107619886 238.424