Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g0434 ATGGCCGCACAATCCTCTACTTCTTCCCTAGACGACGCCGTTCGCGATGTCCAAGACTACGTTTGGGCTAATGAACAGGAAGGTTGGGCATGGGACGCATTTCGTCATGTTTACGAGCTTGTGCAGAATGGCAATGAAGCATTTCGCGAGAGCAGAATGGAAGAGGCAATCAACTTCTACTCGAGAGCGAATAACATCAAATCTGGTGATCCGATCATCCTCAGCAATCGGTGTGCTGCTTATATACGGATTAGTCAATATTTAAAGCATAGAACTCCATCAGCTTCAGAACATAGACCATTGAGTGGGCTTGATCCTACAACACTCGCTGAACTGGGTTTGAAGGATGCTGAAAAGCTTGTTGACCTTCAAAGTAATTCATTAAAATCATACATTTTAAAGGCCAATGCTCTTTTTCTGTTGGAGAAATATGAGAAGGCCCGGGATGTAATTCTTTCAGGCCTTCAACTTGATCCATTTAGCAATTCTCTTCAAGCTTCTCTTCAAAATTTGGAAAGAGTGTCTTCTAGTTCAACAGAGAGGAATAGACACGGAGAACCAGAGCGTAATGATGACTTTGATTGCACTCTCTGCCTGAAGTTATTATATGAACCTGTTACAACCCCTTGTGGACATTCTTTCTGCCGTTCTTGTCTATTTCAGTCAATGGACTGTGGGAACAGATGCCCGTTGTGCAGGACAGTTCTGTTTATTAGTCCTAGATCGTGTTCCATCAGTGTGACATTGAAGAACATCATTCAAAAGAACTTTCCTGATGAATATGCTGAAAGGAAGCAAGAGCATGACAGTTTAATCAACTTTGGTGTAGATTTGCTCCCTCTTTTTGTCATGGATGTTGTCATACCATGTCAAAAGTTTCCACTCAATATATTTGAACCTCGGTATAGACTAATGGTAAGAAGAATAATGGAAGGCAATCATCGGATGGGAATGGTTGTCATTGAGTCTTCAACAGGTTCCATAGCTGAGTATGGCTGTGAAGTGGAAATCACTGAATGTGAGCCACTTCCAGATGGTCGTTTCTATATAGAGATTGAAAGTCGCAGGAGATTTCACATCATCCGTTCATGGGATCAAGATGGGTATCGTGTTGCTCAGGTTGAATGGGTACAGGATATTATGCCACCAGAAGGGACAATAGAAAGAGAGAATTTACAGGAATTGACATATAATGCAGCAGAAAGTGCTCGATCATATATAAGAAGAGCTAAAGAAGCCGCAAGACAAGACCTTATTATTCCCGTTTGTTCCTTTACAATGACAATGCAACACCGAAGCATTAAACTACAGAATTATCATACAGATCAAAGAAGAATTGAGAGACTCCTGAATGTTGAAGAGATGATGCCCTCATTGCGAGACCCTGAGCGCTTCAGTTTTTGGCTGGCTACCCTGTCCAATCGTAGGCCTTCAGAAAGATTGGATCTCCTTCGCATAAGAGATACCACTGAGAGGATTAGACGAGGCTTGATATTTCTTAAAGCAGAGGAACAAGGCTGCAGAATTCAGTAA 1533 0.4194 MAAQSSTSSLDDAVRDVQDYVWANEQEGWAWDAFRHVYELVQNGNEAFRESRMEEAINFYSRANNIKSGDPIILSNRCAAYIRISQYLKHRTPSASEHRPLSGLDPTTLAELGLKDAEKLVDLQSNSLKSYILKANALFLLEKYEKARDVILSGLQLDPFSNSLQASLQNLERVSSSSTERNRHGEPERNDDFDCTLCLKLLYEPVTTPCGHSFCRSCLFQSMDCGNRCPLCRTVLFISPRSCSISVTLKNIIQKNFPDEYAERKQEHDSLINFGVDLLPLFVMDVVIPCQKFPLNIFEPRYRLMVRRIMEGNHRMGMVVIESSTGSIAEYGCEVEITECEPLPDGRFYIEIESRRRFHIIRSWDQDGYRVAQVEWVQDIMPPEGTIERENLQELTYNAAESARSYIRRAKEAARQDLIIPVCSFTMTMQHRSIKLQNYHTDQRRIERLLNVEEMMPSLRDPERFSFWLATLSNRRPSERLDLLRIRDTTERIRRGLIFLKAEEQGCRIQ* 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g0434 510 Pfam ATP-dependent protease La (LON) substrate-binding domain 279 501 IPR003111 -
Dod09g0434 510 ProSiteProfiles Zinc finger RING-type profile. 195 233 IPR001841 -
Dod09g0434 510 ProSiteProfiles Lon N-terminal domain profile. 276 502 IPR003111 -
Dod09g0434 510 PANTHER 43KDA POSTSYNAPTIC PROTEIN-RELATED 4 418 - -
Dod09g0434 510 PANTHER 43KDA POSTSYNAPTIC PROTEIN-RELATED 440 504 - -
Dod09g0434 510 ProSitePatterns Zinc finger RING-type signature. 210 219 IPR017907 -
Dod09g0434 510 Gene3D - 277 379 IPR046336 -
Dod09g0434 510 PANTHER RING FINGER PROTEIN 127 4 418 - -
Dod09g0434 510 PANTHER RING FINGER PROTEIN 127 440 504 - -
Dod09g0434 510 Gene3D - 437 502 - -
Dod09g0434 510 SUPERFAMILY TPR-like 37 168 IPR011990 GO:0005515
Dod09g0434 510 SMART lon_5 278 502 IPR003111 -
Dod09g0434 510 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 181 273 IPR013083 -
Dod09g0434 510 SMART ring_2 195 232 IPR001841 -
Dod09g0434 510 SUPERFAMILY RING/U-box 189 256 - -
Dod09g0434 510 Pfam Zinc finger, C3HC4 type (RING finger) 195 232 - -
Dod09g0434 510 Gene3D Tetratricopeptide repeat domain 35 174 IPR011990 GO:0005515
Dod09g0434 510 SUPERFAMILY PUA domain-like 279 500 IPR015947 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g0434 Dod-Chr9 6451916 6469084 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod09g0434 186 236 C3H Transcription Factor Family AT1G74990 37.037 9.90e-09 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g0434 - - gmx:100802277 803.127