Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g0433 ATGGTTAAGCATAACAATGTTATCCCTAATGGCCACTTCAAGAAGCATTGGCAAAACTATGTGAAGACCTGGTTCAACCAACCAGCAAGGAAGACGAGAAGGCGCCAAGCTCGCCAAAAGAAGGCTGTTAAGATTTTCCCCAGGCCTACTGCTGGACCTCTCAGACCAATTGTTCATGGTCAAACCTTGAAATACAACATGAAAGTCAGAGCCGGCAGAGGATTTTCTCTTGAAGAACTTAAGGCTGCTGGTATTCCCAAAAAGCTGGCTCCCACAATAGGTATTGCTGTTGATCACCGTCGCAAGAACCGTTCTTTGGAGAGTCTGCAAGCTAATGTGCAAAGGCTGAAAACCTACAAGGCCAAGTTGGTTGTGTTCCCAAGACGTGCACGCAAGGTCAAGGCTGGTGATTCTACTCCTGAGGAACTTGCCAATGCCACACAAGTACAGGGTTCATACCTGCCAATTGTGAGGGAGAAGCCATCTGTGGAGCTTGTTAAGGTTACAGATGAAATGAAGGCATTCAAGGCTTATTATAAGCTTCGTCTTGAACGCACAAACAAGAAACATCATGGTGCTAGACTCAAGAAGGCTGCTGAAGCAGAAAAGGAAGAAAAGAAGTGA 624 0.4583 MVKHNNVIPNGHFKKHWQNYVKTWFNQPARKTRRRQARQKKAVKIFPRPTAGPLRPIVHGQTLKYNMKVRAGRGFSLEELKAAGIPKKLAPTIGIAVDHRRKNRSLESLQANVQRLKTYKAKLVVFPRRARKVKAGDSTPEELANATQVQGSYLPIVREKPSVELVKVTDEMKAFKAYYKLRLERTNKKHHGARLKKAAEAEKEEKK* 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g0433 207 Gene3D - 167 207 - -
Dod09g0433 207 ProSitePatterns Ribosomal protein L13e signature. 70 84 IPR018256 GO:0003735|GO:0005840|GO:0006412
Dod09g0433 207 PANTHER 60S RIBOSOMAL PROTEIN L13 1 207 - -
Dod09g0433 207 Pfam Ribosomal protein L13e 7 185 IPR001380 GO:0003735|GO:0005840|GO:0006412
Dod09g0433 207 MobiDBLite consensus disorder prediction 186 207 - -
Dod09g0433 207 Hamap 50S ribosomal protein L13e [rpl13e]. 45 128 IPR001380 GO:0003735|GO:0005840|GO:0006412
Dod09g0433 207 PANTHER 60S RIBOSOMAL PROTEIN L13 1 207 IPR001380 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g0433 Dod-Chr9 6424475 6426417 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod09g0433 2 192 Cytoplasmic Ribosomal Protein Gene Family AT3G49010 88.482 6.28e-128 357
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g0433 K02873 - gmx:100805957 370.163