Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g0417 ATGGGAAGGACTCCTTGCTGCAGCCATGAGGAATTAAAAAAGGGTGCGTGGACAGTTCAAGAAGACCAGAAACTCATAGCTTACATTCAGAGATGGGGCACCGGAAGCTGGCGTACCTTGCCGGAGAAAGCTGGTCTTCAAAGATGTGGAAAGAGTTGCAGGCTGAGATGGTTTAATTACCTCAGACCCGGCATTAAGAGAGGGCAATTAAGCGAAGAAGAAGAGCAGACCATCATAAGACTTCATGCCGTTCTTGGCAACAGTAGGTGGTCAAGTATAGCGAAACACTTGCCAATGCGAACAGACAACGAAATCAAGAACTATTGGAACTCATATCTGAAAAAGCACTCAGAAAAGAAAGGCTTAGATTCACTGAGTCCCAAACCAGTCAGCACAACCAGTTCCTCATCAGATTCAGAAGCTGTAGTCACGACCGGAGAATCAAGCTCCACTGACTTAAACACGGTTCCATCAAAGACTACTACACGACAGTCTCATCAGCAGGGTTCATCAAAGTCAATCTCATCTTCAACTCATCTAATCAACAAAGTAGCAAGAAAAATTGTGGGATCAGGTTATCTTGATGCAGTAAAATCATCATGGCAACATGTTACTGGGACCAGCACTATGCAATCTCATGATGTTAATTTGAGCACCATGTCAGGTCACTCTTCAACTTCTGCGAAGTTGCTCAACAAAGTGGCCACTTCTCTTTCTCAGAGAGTTAATGCCCATGAAGCTGCAAGAGCAGTGTTTTCAAAGTTACTAATGGGGGGTTGTGAAAAAGGTGAGGCTAGTAGTGATGATGGACCACAGGTGACAAGTGCAATTGGCTCCCCTTTTTGTGTTCCTAGGCTAGTTTTCAACCAAGTGGCCACACCTTCATGCTTTTCAGATAATGAAGATAATAATAATTGGCAATGTGCTAATTCATCTGATTATATTTCTTTTGGAAATTGTGCTGTGAGTGGTGGTGGAGACAGTGTATCCGATTTCAACTTGGTAAGTAGTGGCACTGGCAATTGTTGCCTAGCTGAGGATGCAGCAGGATCAATTGATGAATTGATTGAAATTTTGGGGTATGAGGATGAGTTAGGCATGTACCTTTAA 1110 0.4333 MGRTPCCSHEELKKGAWTVQEDQKLIAYIQRWGTGSWRTLPEKAGLQRCGKSCRLRWFNYLRPGIKRGQLSEEEEQTIIRLHAVLGNSRWSSIAKHLPMRTDNEIKNYWNSYLKKHSEKKGLDSLSPKPVSTTSSSSDSEAVVTTGESSSTDLNTVPSKTTTRQSHQQGSSKSISSSTHLINKVARKIVGSGYLDAVKSSWQHVTGTSTMQSHDVNLSTMSGHSSTSAKLLNKVATSLSQRVNAHEAARAVFSKLLMGGCEKGEASSDDGPQVTSAIGSPFCVPRLVFNQVATPSCFSDNEDNNNWQCANSSDYISFGNCAVSGGGDSVSDFNLVSSGTGNCCLAEDAAGSIDELIEILGYEDELGMYL* 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g0417 369 CDD SANT 71 113 IPR001005 -
Dod09g0417 369 CDD SANT 16 61 IPR001005 -
Dod09g0417 369 PANTHER TRANSCRIPTION FACTOR MYB51 1 241 - -
Dod09g0417 369 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 117 IPR017930 -
Dod09g0417 369 ProSiteProfiles Myb-like domain profile. 62 113 IPR001005 -
Dod09g0417 369 SMART sant 66 115 IPR001005 -
Dod09g0417 369 SMART sant 13 63 IPR001005 -
Dod09g0417 369 Gene3D - 13 66 - -
Dod09g0417 369 Pfam Myb-like DNA-binding domain 67 113 IPR001005 -
Dod09g0417 369 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Dod09g0417 369 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 241 - -
Dod09g0417 369 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Dod09g0417 369 MobiDBLite consensus disorder prediction 126 177 - -
Dod09g0417 369 Gene3D - 70 141 - -
Dod09g0417 369 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Dod09g0417 369 MobiDBLite consensus disorder prediction 120 177 - -
Dod09g0417 369 SUPERFAMILY Homeodomain-like 12 109 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g0417 Dod-Chr9 6298522 6300928 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod09g0417 1 137 MYB Transcription Factor Family AT5G15310 67.883 4.12e-62 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dod09g0417 Myb_DNA-binding 2.3e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g0417 K09422 - gmx:100775267 367.466