Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g0416 ATGGAAAACGTTTCAGCTTCAGTGCTGTGTGAGGAAGAGGGTCAGATGGATTTGCCACCTGGGTTCAGATTTCACCCAACTGATGAAGAGCTTATAAGTCATTACCTTTACATGAAGGTCACTGACACAAGCTTTTCTGCAAGGGCCATTGGAGAGGTGGACTTGAATAAGTCTGAGCCTTGGGATTTGCCATGGAAAGCCAAAATGGGTGAAAAAGAGTGGTACTTTTTCTGTTTGAGGGACAGGAAATACCCAACAGGTTTGAGGACTAATAGAGCAACTGAATCAGGATATTGGAAGGCCACAGGAAAAGACAAGGAGATACACAGAGGGAAATCACTGGTTGGGATGAAGAAAACACTGGTTTTCTACAGAGGAAGGGCACCCAAAGGAGAGAAAACTGAATGGGTCATGCATGAGTTCAGGCTTGAGGGAAAATTCTCTGTCCACAACCTCCCCAAAACTGCAAAGAATGAGTGGGTGATTTGTAGGGTCTTTCAGAAGAGTTCAACTGGGAAGAAAACACATATTTCTGGGATGTTGAGGTTGGATTCATTTGGCAATGAATTGGGTCCTTCTTCTGTGTTGTTGCCACCTTTGGCAGATTCACCACCTTCCAATAACGGCAAGAGTACAAAAGCACTGGCTGTGACTGACCCAGCTTACGTGCCCTGCTTCTCCAATCCAATTGATGCTCATAGGAACAACAACCATGGAGGGGTCTTTGATCCCTTCAGCAACACCCCTTTTGGTTCTCCTTCAAATCCTTCGCATGTTATTCCAAGAATCACACCCTATGGTGCTTCATTCTCCTCCTCCTCCTCCTCCTCTCAAGGGGTGCTTCAAAATTCACCAAATTTGCCATTACCAGAAGGTTCTTCTTACAGCACACTGGACCAGACCTTAATTAGAGCCTTGCTTGATGGATCAAACCTGAGGAATAATAATAATAATAATAATAATAATAATAATGGTTTCAAACCAGAGGGGGAAATAATGATCAGTGTCTCACAGGAAACAGGCCTTACTACTACTGATGTGAACAATGAAATCTCTTCAGTTGTGTCAAGTTTTGATTTTGGTAGGAGGCACTATGAAACTCAGCACCCACCTCCACCTGCTTCAGCTGCACTACTGGACCTTGCTACCTTGTGGAATTACTAG 1164 0.4407 MENVSASVLCEEEGQMDLPPGFRFHPTDEELISHYLYMKVTDTSFSARAIGEVDLNKSEPWDLPWKAKMGEKEWYFFCLRDRKYPTGLRTNRATESGYWKATGKDKEIHRGKSLVGMKKTLVFYRGRAPKGEKTEWVMHEFRLEGKFSVHNLPKTAKNEWVICRVFQKSSTGKKTHISGMLRLDSFGNELGPSSVLLPPLADSPPSNNGKSTKALAVTDPAYVPCFSNPIDAHRNNNHGGVFDPFSNTPFGSPSNPSHVIPRITPYGASFSSSSSSSQGVLQNSPNLPLPEGSSYSTLDQTLIRALLDGSNLRNNNNNNNNNNNGFKPEGEIMISVSQETGLTTTDVNNEISSVVSSFDFGRRHYETQHPPPPASAALLDLATLWNY* 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g0416 387 MobiDBLite consensus disorder prediction 310 329 - -
Dod09g0416 387 Pfam No apical meristem (NAM) protein 19 143 IPR003441 GO:0003677|GO:0006355
Dod09g0416 387 MobiDBLite consensus disorder prediction 310 328 - -
Dod09g0416 387 ProSiteProfiles NAC domain profile. 18 168 IPR003441 GO:0003677|GO:0006355
Dod09g0416 387 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 9 381 - -
Dod09g0416 387 MobiDBLite consensus disorder prediction 268 295 - -
Dod09g0416 387 Gene3D NAC domain 27 172 IPR036093 GO:0003677|GO:0006355
Dod09g0416 387 PANTHER NAC DOMAIN-CONTAINING PROTEIN 100 9 381 - -
Dod09g0416 387 SUPERFAMILY NAC domain 14 168 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g0416 Dod-Chr9 6283439 6284988 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod09g0416 16 387 NAC Transcription Factor Family AT5G07680 54.545 1.40e-127 368
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Dod09g0416 NAM 9e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g0416 - - gmx:100170719 488.804