Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g0399 ATGGGGAGACCACCTTGCTGTGACAAAATTGGGATTAAGAAAGGGCCTTGGACTCCGGAGGAGGACATCATCTTGGTCTCTTACATTCAAGAACATGGTCCTGGGAATTGGAGATCAGTTCCCACCAACACAGGTTTGATGAGGTGCAGTAAAAGTTGCAGGCTTAGATGGACCAACTATCTTCGACCTGGTATCAAAAGAGGCAACTTCACAGATCATGAAGAGAAAATGATAATCCACCTCCAAGCGCTTCTGGGGAACAGATGGGCTGCCATAGCTTCTTATCTTCCAGAGAGGACAGACAATGACATAAAGAACTATTGGAACACCCATTTGAAGAAAAAGCTGAAGAAGGCTCAAACTGGGACTGAAGATGAAGGGCATAAGAAAGAAGGACACTCTTGTTCATCATCACAACCAAAGGGTCAGTGGGAGAGAAGGCTCCAAACAGATATCCAAATGGCCAAACAAGCCTTGTGTGAGGCACTGTCCCTTGACAAGCCACCTCTTCAGGACGTAAATATTTTCCCTGACACCAAGCCCTCATCAACAACAACCACTAGTAATTCAATTCTTAACCAACAAACACCACCCTTTGCCTCAACAACACAAAACCAATATTCACCATCATCGACAACATACGCATCAAGTGCTGAGAACATAGCAAGGCTGCTAGAAAACTGGATAAAGAAGTCCCCAAAATCATCTGAAACATACTCAGGTAATAACTCATTCAGCAACATGGTGACCACCACAGGGTCAAGTTCAAGTGAAGGGGCACAGAGCAACATAACTTGCACACCACCAGAGAATTATGCATCATCATTTGATTTCATGAGCTTCAACTCAGCTGATGGTGGTGGCTCTCATCAATCTCTTTCGGTTAAAGAGAGCAAGCCGAACCTGGAGGAAGAACAAGTAGTCCCTCTCACCATGCTGGAGAATTGGCTCTTTGATGATGGAACAGCAGCACAATGCCATGAAGATCTAATTAACATGTCACTGGAGGAAAGTACAGTGGGGTTGTTCTAG 1032 0.4477 MGRPPCCDKIGIKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLMRCSKSCRLRWTNYLRPGIKRGNFTDHEEKMIIHLQALLGNRWAAIASYLPERTDNDIKNYWNTHLKKKLKKAQTGTEDEGHKKEGHSCSSSQPKGQWERRLQTDIQMAKQALCEALSLDKPPLQDVNIFPDTKPSSTTTTSNSILNQQTPPFASTTQNQYSPSSTTYASSAENIARLLENWIKKSPKSSETYSGNNSFSNMVTTTGSSSSEGAQSNITCTPPENYASSFDFMSFNSADGGGSHQSLSVKESKPNLEEEQVVPLTMLENWLFDDGTAAQCHEDLINMSLEESTVGLF* 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g0399 343 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 329 - -
Dod09g0399 343 CDD SANT 69 112 IPR001005 -
Dod09g0399 343 MobiDBLite consensus disorder prediction 118 135 - -
Dod09g0399 343 Gene3D - 13 66 - -
Dod09g0399 343 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Dod09g0399 343 MobiDBLite consensus disorder prediction 170 212 - -
Dod09g0399 343 CDD SANT 16 61 IPR001005 -
Dod09g0399 343 MobiDBLite consensus disorder prediction 176 212 - -
Dod09g0399 343 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Dod09g0399 343 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Dod09g0399 343 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Dod09g0399 343 MobiDBLite consensus disorder prediction 118 144 - -
Dod09g0399 343 PANTHER TRANSCRIPTION FACTOR MYB-HB-LIKE FAMILY-RELATED 1 329 - -
Dod09g0399 343 SMART sant 13 63 IPR001005 -
Dod09g0399 343 SMART sant 66 114 IPR001005 -
Dod09g0399 343 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Dod09g0399 343 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Dod09g0399 343 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Dod09g0399 343 Gene3D - 69 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g0399 Dod-Chr9 5966292 5968247 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod09g0399 1 335 MYB Transcription Factor Family AT5G62470 53.887 1.37e-112 329
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dod09g0399 Myb_DNA-binding 1.1e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g0399 K09422 - gmx:100794319 444.891