Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g0390 ATGGTGCACGTCTCCTTCTACCGCAATTATGGGAAGACGTTTAAGAAGCCGCGTCGTCCGTACGAGAAGGAGCGTTTGGACGCAGAGCTGAAGCTGGTTGGGGAGTACGGTCTACGGTGCAAGAGGGAGCTGTGGAGAGTACAGTACGCCCTCAGCAGGATCCGCAACAACGCGAGGAACCTGCTGACACTCGATGAGAAGAACCCGCGCCGGATCTTCGAGGGGGAGGCTCTCCTCCGCAGGATGTTCCGTTACGGGCTCCTCGACGAGACTCAGAACAAGCTCGATTATGTCTTGGCTCTCACCGTTGAGAACTTTCTGGAACGCAGGCTCCAGACCCTTGTCTTTAAGTCTGGCATGGCCAAGTCCATTCACCATGCTAGGGTCCTCATCAGACAGAGGCATATCAGGGTTGGTAGACAGGTGGTGAACATCCCATCTTTCATGGTGAGGGTTGATTCACAGAAGCACATTGACTTCTCTCTCACAAGTCCCCTTGGTGGTGGACGTCCCGGAAGGGTGAAGAGAAAGAACCTCAGGGCTGCTGCCTAA 552 0.5489 MVHVSFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARNLLTLDEKNPRRIFEGEALLRRMFRYGLLDETQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPLGGGRPGRVKRKNLRAAA* 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g0390 183 CDD S4 109 153 - -
Dod09g0390 183 SMART s4_6 109 180 IPR002942 GO:0003723
Dod09g0390 183 SMART Ribosomal_S4_2 8 108 IPR001912 GO:0019843
Dod09g0390 183 Gene3D - 108 164 IPR036986 GO:0003723
Dod09g0390 183 PANTHER 30S 40S RIBOSOMAL PROTEIN 5 183 IPR022801 -
Dod09g0390 183 ProSitePatterns Ribosomal protein S4 signature. 107 131 IPR018079 GO:0019843
Dod09g0390 183 TIGRFAM uS4_arch: ribosomal protein uS4 11 166 IPR005710 GO:0003735|GO:0006412|GO:0015935
Dod09g0390 183 ProSiteProfiles S4 RNA-binding domain profile. 109 183 - -
Dod09g0390 183 Pfam S4 domain 109 152 IPR002942 GO:0003723
Dod09g0390 183 Pfam Ribosomal protein S4/S9 N-terminal domain 8 108 IPR001912 GO:0019843
Dod09g0390 183 SUPERFAMILY Alpha-L RNA-binding motif 12 158 - -
Dod09g0390 183 PANTHER 40S RIBOSOMAL PROTEIN S9-2-LIKE 5 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g0390 Dod-Chr9 5781900 5784277 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod09g0390 1 183 Cytoplasmic Ribosomal Protein Gene Family AT5G39850 92.350 4.13e-124 346
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g0390 K02997 - gmx:100807649 363.614