LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dod09g0380	ATGCCAGTTGTCCCACAAGTCACAGTAGATGCTTGGCTACCTAAAGGAATTGGATATGACCATAATGACTTAGGAATCACAGCCGTTGTAATCTCAGAATGGGGAAATCACCGGGAAGATGGATCAAAACCGTACTATTTGGGAAGAAGTCTTCCAAATCAAATATTTCAAAAGGAAGAGAGAGAAGCAGAAAATCTTTTACATGGGAATCAAGAAATTGACACTGTGGAATCTGTTGATCAAGATGCAACACCTGATCCAGAGAAAATCAGGCTGGAAGAAGCAGCAACAAAGGCACAGGCTGCTTTCAGGGGCTACTTGGCTCGCAGGGCATTTAGGGCCCTAAAAGGCATAATAAGGTTGCAAGCACTTATTCGTGGGCACTTGGTTAGGAGACAAGCAGTTGCTACATTATGCTCCATGTATGCGATTGTCAAGTTACAAGCATTTGTTCGTGGAAGAAGGGCTAGACAGACTGATGTTGGATTTGAAATCCAAGAGAAGTGTGCCCTATTTAAGCCTCTGGATGGCAAATTTGGTGAGCCAGTTGGTATATCCACAAAAATTTCTCAGCTGTCAGTAAATACTTTCATCTGTAAGCTTTTTGCTTCATCAACAACAACAATGGCCCTGCACCTGCAATATGTTGGTGGGGATCCAAATTCAGTCTCAAGCTGGTTGGAGCGCTGGTCTGCATCTAACTTTTGGAAACCAATCCCCCAACCCAAGAAAATTCGAGACTCTAAATCAAGAAAGCAAGGCAATATTGCAGTTGGAGAAGCTCAAATTAGCAAGTCAAGACGTACCAGGAAGCTTCCTACTGCAAATTTTGAACCAGTCAATGTGCTAGCAAATCCTGAATCTGAAAAACCAAAACGTAATCTACGGAAAATTTCAAGCCAACCATCGGGCCCAGCACAAGAAAATCCACAAAGTGAGCTTGAAAAGGTAAAACGTAACTTGAAAAAGATTCATAACCCTGTTGTTGAGAATGCTGTTTTGCCTGAAGTTGAATCTAAGACCCCAAAGCAGCACTTGGAAAAGACAACAGTTACCGCTGGCCAGGCTGTTTTGGAACAAGGGGTCATTACCTCTAAGGAAAAGATCAAGAAGGAAGCTGTTTCAGAACAAGTGGTCATTTATTCTAAGGAAAAGATGAAGAAGGAAACTGTTTCAGAACAAGTGATCATTACTTCTAATGAAAAGATCAAGACGGAAGCTGTTTCAGAACAAGGGGTCATTACTTCTAATGAAAAGATCAAGAATGAAGCTGTTTCAGAACATGGGGTGATTACTTCTCATGAAAAGAATAAAGAATTATTGACCATCTCCAATGCACCTGTTGTAGAAATTACTCCGAGACCTTCAGTTAAGAAGGAGCAGTTTGACATTCCAAGCAGTTATCAAGTGACTTTGGAATCAGAACCCTTGACAGAGACTATGACTGAAGATAATTACACTTCTGCTGACGAAGCTAAAAATGAGTTGGGTGATCTACCAGAGACTATCTCTGAAGATGAAAATGCTCCATTAACAAATGGAGATTTGAATCACAAGGAAGATAAAAAAGGCAACGAAAACCAGAAACCGACCCGGAAGTCCTCAATATTGGCAAAGGAGGATCGTGCTGAGAGTGGTTTACAGAGTAGTCCTACATTACCAAGCTATATGGCAGCCACTGAATCTGCTAAGGCAAAGTTGAGGACCCAAGGATCCCCAAGGTTTGAACAAGATGGAAGCGAGAGAAACAGCCCTGCTGGGCGACATTCTCTGCCATCTTCAACTAACAGCAAAATTAGTTCACATTCACCTAGGACACGGAGATCAGTTCAAGCAGGGGGCAAAGCGGGCCCCAAAAGTGACAAAGCTTTGCCATCTTCTAAAGGTGGGAATGGGAAGGTAATTCAAGCAGAGTGGAGGAGGTGA	1926	0.4242	MPVVPQVTVDAWLPKGIGYDHNDLGITAVVISEWGNHREDGSKPYYLGRSLPNQIFQKEEREAENLLHGNQEIDTVESVDQDATPDPEKIRLEEAATKAQAAFRGYLARRAFRALKGIIRLQALIRGHLVRRQAVATLCSMYAIVKLQAFVRGRRARQTDVGFEIQEKCALFKPLDGKFGEPVGISTKISQLSVNTFICKLFASSTTTMALHLQYVGGDPNSVSSWLERWSASNFWKPIPQPKKIRDSKSRKQGNIAVGEAQISKSRRTRKLPTANFEPVNVLANPESEKPKRNLRKISSQPSGPAQENPQSELEKVKRNLKKIHNPVVENAVLPEVESKTPKQHLEKTTVTAGQAVLEQGVITSKEKIKKEAVSEQVVIYSKEKMKKETVSEQVIITSNEKIKTEAVSEQGVITSNEKIKNEAVSEHGVITSHEKNKELLTISNAPVVEITPRPSVKKEQFDIPSSYQVTLESEPLTETMTEDNYTSADEAKNELGDLPETISEDENAPLTNGDLNHKEDKKGNENQKPTRKSSILAKEDRAESGLQSSPTLPSYMAATESAKAKLRTQGSPRFEQDGSERNSPAGRHSLPSSTNSKISSHSPRTRRSVQAGGKAGPKSDKALPSSKGGNGKVIQAEWRR*	642

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dod09g0380	641	PANTHER	PROTEIN IQ-DOMAIN 31	57	630	-	-
	Dod09g0380	641	Gene3D	-	91	134	-	-
	Dod09g0380	641	ProSiteProfiles	IQ motif profile.	116	143	IPR000048	GO:0005515
	Dod09g0380	641	MobiDBLite	consensus disorder prediction	486	500	-	-
	Dod09g0380	641	MobiDBLite	consensus disorder prediction	453	641	-	-
	Dod09g0380	641	Pfam	Protein of unknown function (DUF4005)	540	620	IPR025064	-
	Dod09g0380	641	ProSiteProfiles	IQ motif profile.	140	168	IPR000048	GO:0005515
	Dod09g0380	641	PANTHER	IQ-DOMAIN 5-RELATED	57	630	-	-
	Dod09g0380	641	Pfam	IQ calmodulin-binding motif	143	158	IPR000048	GO:0005515
	Dod09g0380	641	Pfam	IQ calmodulin-binding motif	94	113	IPR000048	GO:0005515
	Dod09g0380	641	Pfam	IQ calmodulin-binding motif	116	133	IPR000048	GO:0005515
	Dod09g0380	641	ProSiteProfiles	IQ motif profile.	92	120	IPR000048	GO:0005515
	Dod09g0380	641	SMART	iq_5	114	135	IPR000048	GO:0005515
	Dod09g0380	641	SMART	iq_5	143	161	IPR000048	GO:0005515
	Dod09g0380	641	SMART	iq_5	91	113	IPR000048	GO:0005515
	Dod09g0380	641	MobiDBLite	consensus disorder prediction	512	540	-	-
	Dod09g0380	641	MobiDBLite	consensus disorder prediction	462	485	-	-
	Dod09g0380	641	MobiDBLite	consensus disorder prediction	241	314	-	-
	Dod09g0380	641	MobiDBLite	consensus disorder prediction	573	608	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dod09g0380	Dod-Chr9	5603363	5609607	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dod09g0380	517	641	IQD Protein Family	AT1G74690	52.344	1.49e-27	115

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Dod09g0380	-		-	gmx:100786022	692.189