LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dod09g0378	ATGGAGGTGATCATGCAAGTCAAGGATCAGAAGAGAAGCGAGTCTAGTGATGGTGGTGGTGGTGATGAAGATCGTCCTAAACAAGAGACTGCTATTGAGGAACCACCCATGACTAATTCCGAAAAATCCAAGCTGGAGCCTGTGCCAATTAGTACATCCTCAACCAAAAAAGAAGAGGTTGATGAACTTGAAAATGCGAAAGCCGAAATGGGTGAAGTGAGAGAAGAAAACCAAAGGTTAAAGATGAGCTTGACCCGAATATTGAATGATTACCGGGCACTGCAAATGCAATTCCACAACATAATTCAACAAGATACAAAAAATCCTCCTGCTGATAATAAAGTAAATGATATTGATCATAACCATCAAGAAACAAGTCATCATGAGAAAGCAAAAGCCTCTAAACCATTGAAAGAGGGAGAATATAAAGAAGGGCTGGCACTTGGATTGGACTGCAAATTTGAGACATCAAAGTCAGAAAGCACAACCGAACATGTGGCGAATCCAAGCCCCACCAATAGTTCCGAAGCACCAAAGGAGGAAGCTGAGGAGACTCGGGCACCTAGCAAGGTACTCAAGACAACTAGAGAAGATGCCGGAGAGGATGAACTTTCCCAACACAATCCTACAAAGAAAGCTAGAGTTTGTGTGAGAGCAAGATGTGACACCCCAACAATGAATGATGGATGTCAATGGAGAAAATATGGGCAGAAGATTTCAAAAGGAAACCCTTGTCCTCGAGCTTACTATCGTTGTACAGTTGGGTCATCTTGCCCCGTAAGAAAGCAGGTGCAAAGATGTGCACAAGACATGTCCATTTTAATCACCACCTATGAAGGTAACCACAACCACCCTCTCCCACTTTCAGCCACTGCCATGGCCTCCACCACTTCTGCAGCTGCTTCCATGCTACTCTCAGGCTCATCAACCTCTTACTCTGCCTCAATCTCTTCATCATTAGCAGCCATATCATCCACCACTACTGCCAACCTTCATGGCATGAACTGCTACCTCTCAGATGGTTCCAAATCAAAGCAATTCTTCCTCTCCCATCCAGCATTATCATCTTCACCTTCACACCCAACAATCACTCTTGACCTTACATCAAACCCGTCATCTTCTTCCTCAGCCCCTTTTGGCAGATTCAACTCAAACTACAACCCGGCAAGATACCCTTCTTCCACAAGCCTTAACTTCAGCTCTTCAGAATCCAATGCAATATCTTGGGGCAATAATAATGGTTTCCTCATCTACAATAATAATCCTTCTCAACCATTCAATAACAGGAATGTCCTTAGCACCATAAACCTTGGAAGATCACAACCAATGGAAAACATTTACCATTCCTTCATGCAAAGTAACAACAACAGCAATGTTCCATTCCCTTCTCAAGAAGCTCAACACTCTCTTCCAGACACCATAGCTGCAGCAACAAAAGTAATCACTGCAGACCCCAATTTTCAGTCAGCATTGGCAGTAGCACTCACTTCAATCATCAACACAGGAAGCAGTGGCACTTTGAGCTTACAAGGAAACCAAGGTAGTAGTGTTGGAGAAAATTTGGGTCAGAAAATGAAATGGGGTGAGCTATTTCAAGCATCTAATAATTCTACTTTACCTTCAACTTCCAAAGCCAATATTGGTTGTGCATCAAGTTTCTTGAACAAGCCAGCACCAGCTAATACACAGAATGAGAGTTTGGTGTTTCTATCACCATCTTTGCCATTCTCTAGCACCAAAAGTGCATCAGGGTCTCCTGGTGATAATAGAGACAACACCAATTGA	1785	0.4308	MEVIMQVKDQKRSESSDGGGGDEDRPKQETAIEEPPMTNSEKSKLEPVPISTSSTKKEEVDELENAKAEMGEVREENQRLKMSLTRILNDYRALQMQFHNIIQQDTKNPPADNKVNDIDHNHQETSHHEKAKASKPLKEGEYKEGLALGLDCKFETSKSESTTEHVANPSPTNSSEAPKEEAEETRAPSKVLKTTREDAGEDELSQHNPTKKARVCVRARCDTPTMNDGCQWRKYGQKISKGNPCPRAYYRCTVGSSCPVRKQVQRCAQDMSILITTYEGNHNHPLPLSATAMASTTSAAASMLLSGSSTSYSASISSSLAAISSTTTANLHGMNCYLSDGSKSKQFFLSHPALSSSPSHPTITLDLTSNPSSSSSAPFGRFNSNYNPARYPSSTSLNFSSSESNAISWGNNNGFLIYNNNPSQPFNNRNVLSTINLGRSQPMENIYHSFMQSNNNSNVPFPSQEAQHSLPDTIAAATKVITADPNFQSALAVALTSIINTGSSGTLSLQGNQGSSVGENLGQKMKWGELFQASNNSTLPSTSKANIGCASSFLNKPAPANTQNESLVFLSPSLPFSSTKSASGSPGDNRDNTN*	595

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dod09g0378	594	MobiDBLite	consensus disorder prediction	156	209	-	-
	Dod09g0378	594	Coils	Coil	56	83	-	-
	Dod09g0378	594	SMART	WRKY_cls	226	286	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Dod09g0378	594	MobiDBLite	consensus disorder prediction	55	76	-	-
	Dod09g0378	594	Gene3D	WRKY domain	211	288	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Dod09g0378	594	MobiDBLite	consensus disorder prediction	177	209	-	-
	Dod09g0378	594	MobiDBLite	consensus disorder prediction	161	176	-	-
	Dod09g0378	594	PANTHER	WRKY TRANSCRIPTION FACTOR 36-RELATED	38	590	IPR044810	GO:0003700
	Dod09g0378	594	MobiDBLite	consensus disorder prediction	112	139	-	-
	Dod09g0378	594	ProSiteProfiles	WRKY domain profile.	221	287	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Dod09g0378	594	Pfam	WRKY DNA -binding domain	227	285	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Dod09g0378	594	SUPERFAMILY	WRKY DNA-binding domain	219	287	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Dod09g0378	594	MobiDBLite	consensus disorder prediction	1	31	-	-
	Dod09g0378	594	MobiDBLite	consensus disorder prediction	104	139	-	-
	Dod09g0378	594	MobiDBLite	consensus disorder prediction	1	76	-	-
	Dod09g0378	594	PANTHER	WRKY TRANSCRIPTION FACTOR 61-RELATED	38	590	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dod09g0378	Dod-Chr9	5575137	5580893	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dod09g0378	70	553	WRKY Transcription Factor Family	AT5G15130	37.100	1.08e-74	245

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Dod09g0378		WRKY	3.1e-23	CL0274

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Dod09g0378	-		-	gmx:100804403	610.142