Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g0352 ATGGTGAGGTCTCCATGCTGCGAAAAAATCAGTGTCAAGAGGGGTGTGTGGAGTGCAGAAGAAGATGCAAAGATACTAGCTTTTGTCTCAAAGCATGGATCTGGTAACTGGACTTCTGCCCCCAAAAAAGCAGGGCTTAAGAGGTGTGGAAAGAGTTGCAGGCTTAGGTGGACTAACTACCTCAGGCCTGATCTTAAGCATGATAACTTCACACCCCATGAAGAAGATCTAATTGTTAAGCTTCACGCAGCCATAGGTAGCAGGTGGTCCATAATAGCCCAACAACTTCCTGGGAGAACTGACAATGATGTGAAGAATTACTGGAACACAAAGCTGAAAAAGAAGCTTTCTCAAATGGGAATAGACCCTGTTACTCATAAGCCTTTCTCCAAGCTCATAGCTGACTATGGAAACATTGGTGGTTGCCAGAAACAAAGTAGCCGAATTGGGTCTGTCAATAATAAGGACCTCAAGAATGCAATCATGCTAAAGTCAGAGCCTTATCAGACCCTGCCACAAGAAATTAGAAGCATCAATAGCCAACCAAAGGAATCACCAACATCCCCACCTCAAATGGAACCAACTGAAAACAACATTTTATTTAACAGGAGTCATAATGATAATAATAATAATAACCCTTCAATGGACCTTGCACAGCTCCAAGACATGCCACTAGTGACAAGTGCCTCAAAGTACATAGAAATAGAGAATGAGACCATTCCAATTCCATCATCTATACTTGGGGAAGGGTGCCTGTCAACAACAACATCACCATGTACTTCTTCTAATTGTTCCACTACAGCACAAGAAGCCTTACCTGTGCCCTTCAGTTGGAATGACTTTCTTCTAGAAGATGCATTTGCACCACCTACTGATAACCATGAACAAGGCATGGTGGGTGGTGTCATGTCAAAGGACTTGGTGAGCCACATAGAAAATGTGACAAGACAAAGTTGGAATAAGAAAGAGTTCAGTTCACATCAAGCGACTAGCAATGACCTCATGTTCCCATCATCATCATCATCATCTGATATTTCATTCGTAGAAGCCATGCTTGATCAAGAAAATGAGATGTTTCTAAGTTTTCCTCACCTTATGGAGGAACCACCCAACTACTGA 1119 0.4236 MVRSPCCEKISVKRGVWSAEEDAKILAFVSKHGSGNWTSAPKKAGLKRCGKSCRLRWTNYLRPDLKHDNFTPHEEDLIVKLHAAIGSRWSIIAQQLPGRTDNDVKNYWNTKLKKKLSQMGIDPVTHKPFSKLIADYGNIGGCQKQSSRIGSVNNKDLKNAIMLKSEPYQTLPQEIRSINSQPKESPTSPPQMEPTENNILFNRSHNDNNNNNPSMDLAQLQDMPLVTSASKYIEIENETIPIPSSILGEGCLSTTTSPCTSSNCSTTAQEALPVPFSWNDFLLEDAFAPPTDNHEQGMVGGVMSKDLVSHIENVTRQSWNKKEFSSHQATSNDLMFPSSSSSSDISFVEAMLDQENEMFLSFPHLMEEPPNY* 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g0352 372 CDD SANT 69 112 IPR001005 -
Dod09g0352 372 Gene3D - 7 67 - -
Dod09g0352 372 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Dod09g0352 372 SMART sant 66 114 IPR001005 -
Dod09g0352 372 SMART sant 13 63 IPR001005 -
Dod09g0352 372 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Dod09g0352 372 MobiDBLite consensus disorder prediction 179 212 - -
Dod09g0352 372 CDD SANT 17 61 IPR001005 -
Dod09g0352 372 Gene3D - 68 130 - -
Dod09g0352 372 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Dod09g0352 372 PANTHER F14D16.11-RELATED 1 371 - -
Dod09g0352 372 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Dod09g0352 372 Pfam Myb-like DNA-binding domain 69 110 IPR001005 -
Dod09g0352 372 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Dod09g0352 372 PANTHER F14D16.11-RELATED 1 371 - -
Dod09g0352 372 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g0352 Dod-Chr9 5287579 5289282 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod09g0352 1 368 MYB Transcription Factor Family AT3G28470 41.555 4.16e-71 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dod09g0352 Myb_DNA-binding 6e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g0352 K09422 - gmx:100795381 450.284