Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Dod09g0343 | ATGGGGGAGAGCGAAGAAAGAAAAACATTTAAGGATTTGGGTTTGTCTGAGCCATTGGTGGAAGCTTGTGATAAACTGGGATGGAGTACTCCGTTAAAGATACAGGCAGAAGCAATTCCTCTTGCACTAGAAGGAAAAGATGTTATTGGACTTGCCCAAACAGGTTCTGGTAAGACTGGAGCTTTTGCTCTTCCCATATTGCATGCCCTCTTAGAAGCCCCACGCCCGAAAGATTTCTTTGCTTGTGTGCTGTCTCCCACAAGGGAGCTTGCTATTCAAATTGCTGAGCAGTTTGAAGCTCTAGGTTCTGAAATTGGTGTCAAGTGTGCCGTGCTTGTTGGAGGGATTGACATGGTACAACAATCCATCAAGATAGCAAAGCAGCCTCATATTATTGTTGCAACGCCTGGACGAGTTTTAGATCACCTGAAAAACACCAAAGGATTTTCGCTTAGTAGATTAAAATATTTGGTCCTAGATGAGGCAGACAGGCTGTTGAATGAGGACTTTGAGGAATCACTTAATGAGATTTTACAATTGATTCCTCGTGAGCGGAGAACATTTCTGTTTTCTGCTACGATGACTAAGAAGGTCCAGAAGCTCCAAAGAGTTTGTTTAAGAAATCCTGTGAAGATTGAAGCCGCATCCAAGTACTCAACTGTCGACACACTGAAGCAGCAGTATCGCTTCTTACCTGCCAAACACAAGGATTGCTACCTTGTGTATATTCTCACTGAAATGGCTGGAAGTACGTCAATGGTGTTCACCCGTACATGTGATGCGACTCGGCTTCTGGCTTTGATTCTTAGGAATCTTGGACTAAAAGCCATCCCAATTAATGGTCATATGAGCCAGTCAAAAAGACTTGGAGCATTGAATAAGTTCAAGTCAGGGGAGTGCAACATTCTCCTTTGTACTGATGTAGCTAGTAGAGGACTGGATATACCAACAGTAGATGTTGTGATTAACTATGACATCCCCACAAACTCCAAAGACTATATACATCGCGTGGGAAGGACTGCTCGTGCCGGTCGCTCTGGGGTTGCCATTTCCCTTGTGAACCAATATGAGCTGGAGTGGTACATTCAAATAGAGAAACTTATAGGCAAGAAGTTACCAGAGTATCCTGCACAAGAAGAGGAAGTTTTGCTTTTGGAAGAGCGAGTTAGTGAGGCCAAACGATTATCAGTAACGAAAATGAAGGAGACTGGAGGGAAGAAGAAACGGAGGGGAGGAGAGGATTATGACGAGGAAGATATTGACAGATACTTGGGTCTCAAGGATAAAAAATCCTCCAAGAAGTTTAGAAGATGA | 1314 | 0.4346 | MGESEERKTFKDLGLSEPLVEACDKLGWSTPLKIQAEAIPLALEGKDVIGLAQTGSGKTGAFALPILHALLEAPRPKDFFACVLSPTRELAIQIAEQFEALGSEIGVKCAVLVGGIDMVQQSIKIAKQPHIIVATPGRVLDHLKNTKGFSLSRLKYLVLDEADRLLNEDFEESLNEILQLIPRERRTFLFSATMTKKVQKLQRVCLRNPVKIEAASKYSTVDTLKQQYRFLPAKHKDCYLVYILTEMAGSTSMVFTRTCDATRLLALILRNLGLKAIPINGHMSQSKRLGALNKFKSGECNILLCTDVASRGLDIPTVDVVINYDIPTNSKDYIHRVGRTARAGRSGVAISLVNQYELEWYIQIEKLIGKKLPEYPAQEEEVLLLEERVSEAKRLSVTKMKETGGKKKRRGGEDYDEEDIDRYLGLKDKKSSKKFRR* | 438 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Dod09g0343 | 437 | ProSitePatterns | DEAD-box subfamily ATP-dependent helicases signature. | 158 | 166 | IPR000629 | - | |
Dod09g0343 | 437 | Pfam | Helicase conserved C-terminal domain | 239 | 344 | IPR001650 | - | |
Dod09g0343 | 437 | PANTHER | BNAC02G41920D PROTEIN | 3 | 425 | - | - | |
Dod09g0343 | 437 | SMART | helicmild6 | 263 | 344 | IPR001650 | - | |
Dod09g0343 | 437 | Gene3D | - | 218 | 390 | IPR027417 | - | |
Dod09g0343 | 437 | Pfam | DEAD/DEAH box helicase | 33 | 201 | IPR011545 | GO:0003676|GO:0005524 | |
Dod09g0343 | 437 | PANTHER | RNA HELICASE | 3 | 425 | - | - | |
Dod09g0343 | 437 | MobiDBLite | consensus disorder prediction | 396 | 416 | - | - | |
Dod09g0343 | 437 | CDD | DEADc_DDX47 | 9 | 213 | IPR044765 | GO:0005524 | |
Dod09g0343 | 437 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 39 | 212 | IPR014001 | - | |
Dod09g0343 | 437 | Gene3D | - | 2 | 217 | IPR027417 | - | |
Dod09g0343 | 437 | ProSiteProfiles | DEAD-box RNA helicase Q motif profile. | 8 | 36 | IPR014014 | GO:0003724 | |
Dod09g0343 | 437 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 78 | 365 | IPR027417 | - | |
Dod09g0343 | 437 | CDD | SF2_C_DEAD | 224 | 353 | - | - | |
Dod09g0343 | 437 | SMART | ultradead3 | 27 | 227 | IPR014001 | - | |
Dod09g0343 | 437 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 239 | 383 | IPR001650 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Dod09g0343 | Dod-Chr9 | 5150544 | 5158346 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Dod09g0343 | 9 | 376 | Eukaryotic Initiation Factors Gene Family | AT3G19760 | 30.914 | 2.24e-61 | 203 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Dod09g0343 | K14777 | - | gmx:100775796 | 788.489 |