Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g0343 ATGGGGGAGAGCGAAGAAAGAAAAACATTTAAGGATTTGGGTTTGTCTGAGCCATTGGTGGAAGCTTGTGATAAACTGGGATGGAGTACTCCGTTAAAGATACAGGCAGAAGCAATTCCTCTTGCACTAGAAGGAAAAGATGTTATTGGACTTGCCCAAACAGGTTCTGGTAAGACTGGAGCTTTTGCTCTTCCCATATTGCATGCCCTCTTAGAAGCCCCACGCCCGAAAGATTTCTTTGCTTGTGTGCTGTCTCCCACAAGGGAGCTTGCTATTCAAATTGCTGAGCAGTTTGAAGCTCTAGGTTCTGAAATTGGTGTCAAGTGTGCCGTGCTTGTTGGAGGGATTGACATGGTACAACAATCCATCAAGATAGCAAAGCAGCCTCATATTATTGTTGCAACGCCTGGACGAGTTTTAGATCACCTGAAAAACACCAAAGGATTTTCGCTTAGTAGATTAAAATATTTGGTCCTAGATGAGGCAGACAGGCTGTTGAATGAGGACTTTGAGGAATCACTTAATGAGATTTTACAATTGATTCCTCGTGAGCGGAGAACATTTCTGTTTTCTGCTACGATGACTAAGAAGGTCCAGAAGCTCCAAAGAGTTTGTTTAAGAAATCCTGTGAAGATTGAAGCCGCATCCAAGTACTCAACTGTCGACACACTGAAGCAGCAGTATCGCTTCTTACCTGCCAAACACAAGGATTGCTACCTTGTGTATATTCTCACTGAAATGGCTGGAAGTACGTCAATGGTGTTCACCCGTACATGTGATGCGACTCGGCTTCTGGCTTTGATTCTTAGGAATCTTGGACTAAAAGCCATCCCAATTAATGGTCATATGAGCCAGTCAAAAAGACTTGGAGCATTGAATAAGTTCAAGTCAGGGGAGTGCAACATTCTCCTTTGTACTGATGTAGCTAGTAGAGGACTGGATATACCAACAGTAGATGTTGTGATTAACTATGACATCCCCACAAACTCCAAAGACTATATACATCGCGTGGGAAGGACTGCTCGTGCCGGTCGCTCTGGGGTTGCCATTTCCCTTGTGAACCAATATGAGCTGGAGTGGTACATTCAAATAGAGAAACTTATAGGCAAGAAGTTACCAGAGTATCCTGCACAAGAAGAGGAAGTTTTGCTTTTGGAAGAGCGAGTTAGTGAGGCCAAACGATTATCAGTAACGAAAATGAAGGAGACTGGAGGGAAGAAGAAACGGAGGGGAGGAGAGGATTATGACGAGGAAGATATTGACAGATACTTGGGTCTCAAGGATAAAAAATCCTCCAAGAAGTTTAGAAGATGA 1314 0.4346 MGESEERKTFKDLGLSEPLVEACDKLGWSTPLKIQAEAIPLALEGKDVIGLAQTGSGKTGAFALPILHALLEAPRPKDFFACVLSPTRELAIQIAEQFEALGSEIGVKCAVLVGGIDMVQQSIKIAKQPHIIVATPGRVLDHLKNTKGFSLSRLKYLVLDEADRLLNEDFEESLNEILQLIPRERRTFLFSATMTKKVQKLQRVCLRNPVKIEAASKYSTVDTLKQQYRFLPAKHKDCYLVYILTEMAGSTSMVFTRTCDATRLLALILRNLGLKAIPINGHMSQSKRLGALNKFKSGECNILLCTDVASRGLDIPTVDVVINYDIPTNSKDYIHRVGRTARAGRSGVAISLVNQYELEWYIQIEKLIGKKLPEYPAQEEEVLLLEERVSEAKRLSVTKMKETGGKKKRRGGEDYDEEDIDRYLGLKDKKSSKKFRR* 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g0343 437 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 158 166 IPR000629 -
Dod09g0343 437 Pfam Helicase conserved C-terminal domain 239 344 IPR001650 -
Dod09g0343 437 PANTHER BNAC02G41920D PROTEIN 3 425 - -
Dod09g0343 437 SMART helicmild6 263 344 IPR001650 -
Dod09g0343 437 Gene3D - 218 390 IPR027417 -
Dod09g0343 437 Pfam DEAD/DEAH box helicase 33 201 IPR011545 GO:0003676|GO:0005524
Dod09g0343 437 PANTHER RNA HELICASE 3 425 - -
Dod09g0343 437 MobiDBLite consensus disorder prediction 396 416 - -
Dod09g0343 437 CDD DEADc_DDX47 9 213 IPR044765 GO:0005524
Dod09g0343 437 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 39 212 IPR014001 -
Dod09g0343 437 Gene3D - 2 217 IPR027417 -
Dod09g0343 437 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 8 36 IPR014014 GO:0003724
Dod09g0343 437 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 78 365 IPR027417 -
Dod09g0343 437 CDD SF2_C_DEAD 224 353 - -
Dod09g0343 437 SMART ultradead3 27 227 IPR014001 -
Dod09g0343 437 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 239 383 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g0343 Dod-Chr9 5150544 5158346 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod09g0343 9 376 Eukaryotic Initiation Factors Gene Family AT3G19760 30.914 2.24e-61 203
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g0343 K14777 - gmx:100775796 788.489