Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g0342 ATGCCTCTCGCCGCCGTGGCCGGCGCCGGCGAGATCATGCTGTTCGGTGTGAGGGTGGCGGTGGACTCCATGAGGAAGAGCGTCAGCATGAACAACCTCTCCCAGTACGAGCACACTGACACCTCCCCTCCCGACTCCAACAACAACAACAGAAACGACGCCGTCCCCGCAGCCGGCTACGCCTCCGCCGACGACGCCGTTCCCCATCCCTCCGGCCGCCATCGCAAGCGAGGGATTCCATGGACGGAGGAAGAGCACAAGTTGTTCCTGCAGGGATTGCAGAAAGTGGGGAAGGGTGATTGGAGAGGGATCTCAAGGAACTATGTTAAAACCAGGACCCCAACTCAGGTTGCGAGCCATGCTCAGAAGTACTTCCTCCGACGCAGCAACCTCAATCGCCGGCGCCGGAGAACCAGCCTCTTTGACATCACCACTGACACCGTATCTGCGATCCCGATGGAGGAAGAGCAGGTCCAGCATCAAGACAATGTGTCTCATTCACATTCCGTGTGCCCTGCAACCCCAGCTGAAAGCAACAACTTGAATGGGTTTCCAGTGATGCCAGTGTATCCAACTGGTCTTGGTTCTGGAGCCATTACAGTTCAAGTTGCGAATCCAATGGAAAAACTTGCTTTGGGACAAGGAAATGTGGAACAGAAACAGAATGAACCAACCAAGATAGCTTTTACCATTCCTGTTGTTTCAGATCCTAGAGCTTTCATGGTGCCTGATATCGCTTCTGGTTCGAGTTCAGCTGTTGATCCACCAACACTGTCCCTGGGGCTATCCTTGTCATCTGGTCAAAGTCAGACAACATCATCAAGACATTCAACTTTACATGCCATTCCATGCTTCAGCAATGGAGATAGCATCATTAGTGTTTCTTAA 888 0.5282 MPLAAVAGAGEIMLFGVRVAVDSMRKSVSMNNLSQYEHTDTSPPDSNNNNRNDAVPAAGYASADDAVPHPSGRHRKRGIPWTEEEHKLFLQGLQKVGKGDWRGISRNYVKTRTPTQVASHAQKYFLRRSNLNRRRRRTSLFDITTDTVSAIPMEEEQVQHQDNVSHSHSVCPATPAESNNLNGFPVMPVYPTGLGSGAITVQVANPMEKLALGQGNVEQKQNEPTKIAFTIPVVSDPRAFMVPDIASGSSSAVDPPTLSLGLSLSSGQSQTTSSRHSTLHAIPCFSNGDSIISVS* 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g0342 295 CDD SANT 80 125 IPR001005 -
Dod09g0342 295 MobiDBLite consensus disorder prediction 34 56 - -
Dod09g0342 295 SUPERFAMILY Homeodomain-like 74 130 IPR009057 -
Dod09g0342 295 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 76 127 IPR006447 GO:0003677
Dod09g0342 295 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 73 129 IPR017930 -
Dod09g0342 295 Pfam Myb-like DNA-binding domain 80 125 IPR001005 -
Dod09g0342 295 PANTHER TRANSCRIPTIONAL ADAPTOR 2 ADA2 -RELATED 11 295 - -
Dod09g0342 295 MobiDBLite consensus disorder prediction 34 55 - -
Dod09g0342 295 ProSiteProfiles Myb-like domain profile. 73 125 IPR001005 -
Dod09g0342 295 ProSiteProfiles SANT domain profile. 81 129 IPR017884 -
Dod09g0342 295 Gene3D - 79 131 - -
Dod09g0342 295 PANTHER KIN2 11 295 - -
Dod09g0342 295 SMART sant 77 127 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g0342 Dod-Chr9 5143447 5146544 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Dod09g0342 Myb_DNA-binding 2.3e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g0342 - - gmx:778059 348.591