Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g0323 ATGTCTTCTCCCACACCCACAGATCCCTCTTCCCGTCACTACACCTACAACCGCAAGCAAAAATCCCTCGGCCTCTTGTGCACCAATTTCTTGAAATTGTATAATCGCGACGGCATCCACTTGATCGGCCTCGACGACGCTGCCGCCCGATTAGGAGTTGAGAGGCGGCGGATCTATGATATTGTTAATGTCTTGGAGAGTGTCGGGGTGCTTTCGAGAAAAGCCAAGAATCAGTACACTTGGAAAGGCTTTGCTGCAATTCCTGGGGCCTTGCAGGAGCTCAAGGACGAGGGTTTTAGGGAGAATCCATATGGTTTTGATGGTGCCAACGACGCTGCAAAAGTTTCAGATGACGAGGATGACGAAGAAACATTGTCTAATCCTAGTACTGGAAGTCAGAATGACAAATCGAATGCTAGTTCCTCGCTTGTCAAGTCTTTGAAGAGTGAAAACAGAAGGGAAAAATCTCTTGCTTTGCTTACTCAGAATTTTGTCAAGCTCTTTGTCTGCTCCAATATTGAAATGATTTCCCTTGACGAAGCTGCAAAGTTGTTGCTTGGAAATGCACATAACTCATCGATAATGAGGACAAAAGTCAGACGCCTCTATGATATTGCAAATGTGTTGTCCTCCATGAACCTAATTGAGAAGACCCATACAACAGACACGAGAAAACCAGCATTCAGGTGGGTGGGTTTGAAAGGGAAAACATGGAGTGAGTCAGTTGACTCAGTTCACAATTCAAGTCTCAACAATGAGTCAGGGAAAAGGATGTTTGGAAATGATGTCACAAACATCAGCTTTAAGAGGAACAAAGTGGATTTGTTCGGGGATGGAGACAGTAACAAGAACTCTAGGATGCTGGAAAATGATAGTTGGCGGGCTCAGCTAGAAAAAAGCAATAAAAAAAAAGATGCAAAAGCAAAACAGGCTTCAAGGGGCTATCAGTTTGGTCCTTTCGCTCCAGCTCTTGTGCCAAAATCTGGAGGAGCCACTGATAGTAGTAGTAGTGTGAAGCAGGTGCATGATTGGGAGAATCTCTCTACGAACTATCGTCCTAAGTATCAAAACCAAGCTTTGAGAGACCTTTTCTCCCACTACATGGAAGCATGGAAATCTTGGTACTCTGAAGCTGCTGGCAAGAGGCCAGTAAAAATTTTGTAG 1164 0.445 MSSPTPTDPSSRHYTYNRKQKSLGLLCTNFLKLYNRDGIHLIGLDDAAARLGVERRRIYDIVNVLESVGVLSRKAKNQYTWKGFAAIPGALQELKDEGFRENPYGFDGANDAAKVSDDEDDEETLSNPSTGSQNDKSNASSSLVKSLKSENRREKSLALLTQNFVKLFVCSNIEMISLDEAAKLLLGNAHNSSIMRTKVRRLYDIANVLSSMNLIEKTHTTDTRKPAFRWVGLKGKTWSESVDSVHNSSLNNESGKRMFGNDVTNISFKRNKVDLFGDGDSNKNSRMLENDSWRAQLEKSNKKKDAKAKQASRGYQFGPFAPALVPKSGGATDSSSSVKQVHDWENLSTNYRPKYQNQALRDLFSHYMEAWKSWYSEAAGKRPVKIL* 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g0323 387 PANTHER TRANSCRIPTION FACTOR E2F 10 378 IPR015633 GO:0000978|GO:0006357
Dod09g0323 387 Pfam E2F/DP family winged-helix DNA-binding domain 154 232 IPR003316 GO:0005667|GO:0006355
Dod09g0323 387 Pfam E2F/DP family winged-helix DNA-binding domain 19 83 IPR003316 GO:0005667|GO:0006355
Dod09g0323 387 SUPERFAMILY "Winged helix" DNA-binding domain 154 233 IPR036390 -
Dod09g0323 387 MobiDBLite consensus disorder prediction 126 146 - -
Dod09g0323 387 MobiDBLite consensus disorder prediction 110 146 - -
Dod09g0323 387 SUPERFAMILY "Winged helix" DNA-binding domain 17 81 IPR036390 -
Dod09g0323 387 PANTHER E2F TRANSCRIPTION FACTOR-LIKE E2FF 10 378 - -
Dod09g0323 387 SMART E2F_TDP_2 18 83 IPR003316 GO:0005667|GO:0006355
Dod09g0323 387 SMART E2F_TDP_2 152 232 IPR003316 GO:0005667|GO:0006355
Dod09g0323 387 Gene3D - 13 85 IPR036388 -
Dod09g0323 387 Gene3D - 147 234 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g0323 Dod-Chr9 4926725 4937178 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod09g0323 13 384 E2F-DP Transcription Factor Family AT3G48160 57.672 3.61e-135 390
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Dod09g0323 E2F_TDP 8.4e-21 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g0323 K09391 - gmx:100795252 525.783
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g1662 05 41894763 41898474 Dod09g0323 09 4926725 4937178 PCT