Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g0316 ATGGGTGGCAACGGGAAGCACCGTTGGAAAATCTCGTTCCATCGCCCATCCTCCAATTCCAAGAAGGAACAGCAACAAAAATTGAAGAACCCTCCAAACGAGTTCCTATGCCCCATTTTGGGTTCCCTAATGTCCGACCCGGTGGTGGTAGCTTCGGGTCAAACCTTCGAGCGCATCTCCGTCCAAGTCTGCACTGACCTCAACTTCGCCCCCACCCTGCCCGACGGAACCCGACCCGACTTCTCAACCCTTATCCCGAACCTCGCCATCAAGACCACCATCCTCAACTGGTGCCGCACCTCCAAAACCCTGCACCCCACCCCACCCGATTACTCCTCCGTCGAACGCATCGTCCGCGCCCAAATGGCCTCCTCCGCCGCCGCGCCGGAGCCCGAGATTAGGGTCTCCGAGAGGGAGCTCCTGCAGGCCGTCGCGGATAACCCTCCGGTGATATTCTCCCACGCCGCCACCGAGCTTGGCCAACGAGTCAATCACTTCAACTCGGGATCCTCCGAGGAGTCCGTCGTCATCGCCGCCAGTCCCGGGACTCCGTTACCGTTCGCTGTCCGCCCGATATGCTTCTCCTCTTCTTCCTCTTCCTCTGTCGAGATCAGCGAGGTCGAGATCCAAGGGCAGAACCCTAACCTCCCTGTCTCCGAAGAGGAGGAGAAGCTGCTCGCGAAGATGAAGAGCAGCGAGGTTTTCGAGCAGGAAGAAGGAGCGATCTCGCTCCGTGCCGTCACGAGGAACAGCGACGAAGCCAGGGTTTCGCTGTGCACGCCGCGCTTGCTGCACGCGCTGCGGTCGCTGGTGGCGTCGCGGTACGGCGTCGTTCAGGTCAACGCGGTGGCGTCCCTGGTCAACCTCTCCTTGCAGAGAGTCAACAAGGTGAAGATCGTGCGGTCAGGATTCGTTCCGTTTCTCATCGACGCGCTGAAAGGCGGATCCGCTGAGACGCAGGAGCACGCTGCGGGCGCGCTCTTCAGCTTGGCACTCGACGACGATAACAAGATGGCGATTGGAGTGCTCGGCGCGTTGGAGCCGTTGATGCACGCTCTCCGATCCGAGTCAGAGAGGACTCGGCACGACTCGGCGCTGGCGCTTTACCACTTGAGTCTGGTTCAGAGCAACCGAGTCAAGCTCGTGAAGCTCGGCGTGATCCCCACGCTCCTCTCGATGGTGAAATCGGGCGCGTTGGCGAGTAGGGTTTTGTTGATTCTTTGTAATCTCGCGGCTTCAACGGAGGGGAGGACTGCTATGCTGGACGCGGATGCGGTGGAGTGTTTCGTGGGGATGCTGAGGGGGCACGAGTTGGACTCCGAGTCGACTCGGGAGAACTGTGTTGCGGCGCTTTATGCGCTGAGTCATAGGAGCATGAGGTTTAAGGGGCTGGCGAGGGAGGCTGGGGCGGTGGAGGTTTTGAAGGTGGTGGAGGAGACGGGGACCCAGAGGGCAAGGGAGAAGGCCAAGAGGGTGATTCAGATGATGAGGGCTGTTGTTGATGGTGAACATGAGGAAGGGTTTGAGCTTGACTCGGTTTTGGACTCGGGCGGGTGGACTCGGTCCCGGTACCCTGTTGGTGGTGGTGGTGTTGGGAGGAGTCATAATGTCAATCATTTCAACTCCACTATGTTTTAG 1638 0.5946 MGGNGKHRWKISFHRPSSNSKKEQQQKLKNPPNEFLCPILGSLMSDPVVVASGQTFERISVQVCTDLNFAPTLPDGTRPDFSTLIPNLAIKTTILNWCRTSKTLHPTPPDYSSVERIVRAQMASSAAAPEPEIRVSERELLQAVADNPPVIFSHAATELGQRVNHFNSGSSEESVVIAASPGTPLPFAVRPICFSSSSSSSVEISEVEIQGQNPNLPVSEEEEKLLAKMKSSEVFEQEEGAISLRAVTRNSDEARVSLCTPRLLHALRSLVASRYGVVQVNAVASLVNLSLQRVNKVKIVRSGFVPFLIDALKGGSAETQEHAAGALFSLALDDDNKMAIGVLGALEPLMHALRSESERTRHDSALALYHLSLVQSNRVKLVKLGVIPTLLSMVKSGALASRVLLILCNLAASTEGRTAMLDADAVECFVGMLRGHELDSESTRENCVAALYALSHRSMRFKGLAREAGAVEVLKVVEETGTQRAREKAKRVIQMMRAVVDGEHEEGFELDSVLDSGGWTRSRYPVGGGGVGRSHNVNHFNSTMF* 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g0316 545 CDD RING-Ubox 36 83 - -
Dod09g0316 545 Pfam U-box domain 32 101 IPR003613 GO:0004842|GO:0016567
Dod09g0316 545 SMART Ubox_2 34 97 IPR003613 GO:0004842|GO:0016567
Dod09g0316 545 SUPERFAMILY ARM repeat 224 496 IPR016024 -
Dod09g0316 545 SUPERFAMILY RING/U-box 18 105 - -
Dod09g0316 545 SMART arm_5 333 373 IPR000225 GO:0005515
Dod09g0316 545 SMART arm_5 292 332 IPR000225 GO:0005515
Dod09g0316 545 SMART arm_5 374 412 IPR000225 GO:0005515
Dod09g0316 545 SMART arm_5 413 456 IPR000225 GO:0005515
Dod09g0316 545 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 13 107 IPR013083 -
Dod09g0316 545 Pfam Armadillo/beta-catenin-like repeat 333 372 IPR000225 GO:0005515
Dod09g0316 545 Pfam Armadillo/beta-catenin-like repeat 295 331 IPR000225 GO:0005515
Dod09g0316 545 PANTHER U BOX DOMAIN-CONTAINING 1 529 - -
Dod09g0316 545 ProSiteProfiles U-box domain profile. 30 104 IPR003613 GO:0004842|GO:0016567
Dod09g0316 545 MobiDBLite consensus disorder prediction 1 31 - -
Dod09g0316 545 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 38 1 529 - -
Dod09g0316 545 Gene3D - 218 495 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g0316 Dod-Chr9 4834565 4837893 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod09g0316 1 540 U-box Gene Family AT5G65200 56.940 0.0 576
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g0316 - - aip:107643932 820.076