Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g0301 ATGACCACTCTCAATCCCAATCCCAACCCCAACCCACCACCTGATCGCCGCCGTCCCCTGTCGTTCCCGGCGGTGCACCCCTCCGACTCCATCTCTCCAGCCACCCTCCTCTCCTCCCTCCTCACCCTCTCCCAAACCATCCTCAACCTCAACAACAACAACAACAACCCCTTCTTCACCCAGCGCCGCAACGCCCGTGAAGCCACGCGCCAGGTCTCCCTCCTCCTCATCTTCCTTCAAGACCTCCGCCCCTCGCTCCTCCCAAACGACGCCGTTCCCTCCCTCTCCGACCTCCACTTCGCCTTCCAGAACCTTCTCTTCCTCTTTCAAGACTGCGCCCGCGTTGGCCCCCGCCTCTGGATGCTCCTCAACTCCCGCCACGTGGCGTCCCTGTTCCGGTCTCACTTTCGCACCGTCGCAACTGCACTCGATGCCCTCCCCCTCCACAGAATCGAAGTTTGTTGGGAAGTTAGAGAGTTAGTTGAGTTAGTTACAAAGCAAGCAAGGAAAGCCAAGTTCGAACTCGACCCCGAAGATGAAACCGAAGCCGAACGAGTTATATCCGTTTTGCATCAGTTCGAGAGAGGAACCGAGCCCGATTTAAATTCCATGAAGAGAATCCTCACATACCTCGAAATCAAGAGCTGGATCGATTGTAACAGAGAAGTGAAATTCTTGGAAGAGGAAATGCTCTGTTTCGAGTCCTCTGCTTCCGACGAAGAAGAGGTTTCTTTGATTAGTAGTTTGATTGGATTCTTGTGTTACTGTAGAGGAGTGATATTCGAAGCGATTGATTTTACGTCCCTTAGCAATGCTGATAGTTCTGAAGCGAGGCGCGGCGGCGGCAGCGGCGCGGAGGTGCTGAGCTGCGAGAGGCGGCCGCCGGAAGATTTCCGGTGTCCGATCTCGCTTGAGATGATGACGGATCCTGTGACTACCTCGACAGGCCAGACGTATGATCGAAACTCGATCCAGAAATGGCTGAAGGGTGGAAATAGAGTCTGTCCGAAAACAGGGGAGAGGCTTTCCACTACAGAGTTGGTTCCCAACACGACATTGAAACGGCTCATCCAACAATTCTGCGCCGATAACGGCATCTCCCTCGGCAAATCGAGCAGCAGGAATCGTGGTACCGCGTCGAGGACCGCCGAGGCCGGCAGTCCTGCCGCAGCACACGCAATGCAGTTTCTGTCCTGGTTTCTAGCTCGGGGGCTCGTGTTTGGAACAGAGGAGCAGCAGAACAAGGCCGCGTACGAGGTTCGATTGCTCGCACGGTCCAACGTTTTCAACCGAACGTGTCTGATCGAGGTTGGAGCGGTGCCGCCTTTGCTTGATCTTCTGGCCACGGGTGATAGAACAATGCAAGAGAATGCAATGGCTGCGTTGTTGAGGCTCTCCAAGCATGCAATTGGCCAGCAATATATAATGGAAACCAGAGGCTTGGTACCAATTCTCAGAGTTCTCAAAAGAGGGCTCAGTTTCGAAGCTCGCCAGACTGCGGCCGCTACGATATTTTATCTTTGTTCGGTGGAGGAGTATAGGAAAATCATTGGAGAGAACCCGGATGCGATTCCGGGTTTGGTGGAGATCATCAAAGACGGAGTACCAACAACAACTGCAAGTTGCTCCACCGGGAGTCGGCTACATAGATCAAGATCAGGCGACGTCATAATCTATGGGAAAAAGAACGCAGTGGTTGCGATTTTCGGGCTGCTCTTGCATCCCAAGAATCACGCCAGGGTGCTTGAAGCCGGTGCAGTTCCTGCTCTTGTTGGAGTCTTATCTTCTTGTGTAGACAAAGCTCATCTTGTCACCGATTGTCTAGCGGTTCTAGCTGCCTTGGCAGAGAGTTCAGAGGGAGCACGCGCCGTGTTAAGAGCCGAGGCCTTGCACTTGGTCGTTATGATCTTGCAATGTTCAACGTCGCGTGCGGGGAAGGAGCACTGCGTTTCGATTTTGATGTCTCTATGCGTGCATGTGGGTGATGAAGTTGTAGGTGTTCTAGTTGAGGAACCTTCGCTCATGCCTCTGCTCTATTCGATTCTCACTGATGGTACTCCTCACGCTGCAAAGAAAGCACGGTCCCTCATCAGGGTTCTGCAAGAATTCAACGAGCAAAGAGCTTCTGGATCGGCGGCGGGATCATCGGTTTCGCGGCAACAATTGGTTCGGTTGAACTAG 2181 0.5346 MTTLNPNPNPNPPPDRRRPLSFPAVHPSDSISPATLLSSLLTLSQTILNLNNNNNNPFFTQRRNAREATRQVSLLLIFLQDLRPSLLPNDAVPSLSDLHFAFQNLLFLFQDCARVGPRLWMLLNSRHVASLFRSHFRTVATALDALPLHRIEVCWEVRELVELVTKQARKAKFELDPEDETEAERVISVLHQFERGTEPDLNSMKRILTYLEIKSWIDCNREVKFLEEEMLCFESSASDEEEVSLISSLIGFLCYCRGVIFEAIDFTSLSNADSSEARRGGGSGAEVLSCERRPPEDFRCPISLEMMTDPVTTSTGQTYDRNSIQKWLKGGNRVCPKTGERLSTTELVPNTTLKRLIQQFCADNGISLGKSSSRNRGTASRTAEAGSPAAAHAMQFLSWFLARGLVFGTEEQQNKAAYEVRLLARSNVFNRTCLIEVGAVPPLLDLLATGDRTMQENAMAALLRLSKHAIGQQYIMETRGLVPILRVLKRGLSFEARQTAAATIFYLCSVEEYRKIIGENPDAIPGLVEIIKDGVPTTTASCSTGSRLHRSRSGDVIIYGKKNAVVAIFGLLLHPKNHARVLEAGAVPALVGVLSSCVDKAHLVTDCLAVLAALAESSEGARAVLRAEALHLVVMILQCSTSRAGKEHCVSILMSLCVHVGDEVVGVLVEEPSLMPLLYSILTDGTPHAAKKARSLIRVLQEFNEQRASGSAAGSSVSRQQLVRLN* 727
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g0301 726 MobiDBLite consensus disorder prediction 1 20 - -
Dod09g0301 726 Pfam U-box domain 295 364 IPR003613 GO:0004842|GO:0016567
Dod09g0301 726 Gene3D - 547 714 IPR011989 -
Dod09g0301 726 SMART arm_5 427 467 IPR000225 GO:0005515
Dod09g0301 726 SMART arm_5 574 616 IPR000225 GO:0005515
Dod09g0301 726 SMART arm_5 468 509 IPR000225 GO:0005515
Dod09g0301 726 CDD RING-Ubox_PUB 298 340 IPR045210 -
Dod09g0301 726 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 294 368 IPR013083 -
Dod09g0301 726 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 585 629 IPR000225 GO:0005515
Dod09g0301 726 ProSiteProfiles U-box domain profile. 293 367 IPR003613 GO:0004842|GO:0016567
Dod09g0301 726 PANTHER U BOX DOMAIN-CONTAINING 14 710 - -
Dod09g0301 726 SMART Ubox_2 297 360 IPR003613 GO:0004842|GO:0016567
Dod09g0301 726 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 438 480 IPR000225 GO:0005515
Dod09g0301 726 MobiDBLite consensus disorder prediction 1 24 - -
Dod09g0301 726 SUPERFAMILY ARM repeat 405 703 IPR016024 -
Dod09g0301 726 Gene3D - 403 546 IPR011989 -
Dod09g0301 726 PANTHER OS07G0532750 PROTEIN 14 710 - -
Dod09g0301 726 Pfam Armadillo/beta-catenin-like repeat 430 466 IPR000225 GO:0005515
Dod09g0301 726 SUPERFAMILY RING/U-box 291 367 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g0301 Dod-Chr9 4618801 4621464 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod09g0301 17 711 U-box Gene Family AT1G10560 39.326 8.51e-158 471
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g0301 - - adu:107491382 990.719