Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g0299 ATGGGGGTGGGGATTGTCATTTCCTTGATCCTCTTGTTTGTGGGGATTACTATTTTGGTGGCAATCCATGTGTGCATAGTGGGGAGGGCTTTCAGAACAAGAGATCATCATGGTGGAGAAGGAGGAACTCGGGGCCAGGAAACAATCCCTGTTGGTGGCAACATTGATGATTTGAAGAACCTTCCTTGCTTTGATTATGAGGAGCCAGAGAAAGGGTGCAGCAGCCTTGTGGACTGTGCTGTTTGCTTGGAGAGCTTCAAGGTTGGTGATGCTTGCAGGTTGTTGCCTAGGTGCAGCCACAGCTTCCATGTCCAATGCATAGATTCATGGATACTAAAGACACCCTTTTGTCCCATTTGTAGAACATGGGTTCATGATCGAGTAATGGTTCCTACTACTAGAGTCATGAGGGAAGAGGAAGAAAGTGCTGTTCCTGCCAATTTAGAAATTGAAATTACATAG 462 0.461 MGVGIVISLILLFVGITILVAIHVCIVGRAFRTRDHHGGEGGTRGQETIPVGGNIDDLKNLPCFDYEEPEKGCSSLVDCAVCLESFKVGDACRLLPRCSHSFHVQCIDSWILKTPFCPICRTWVHDRVMVPTTRVMREEEESAVPANLEIEIT* 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g0299 153 Pfam RING-like zinc finger 78 107 IPR001841 -
Dod09g0299 153 SUPERFAMILY RING/U-box 78 127 - -
Dod09g0299 153 SMART ring_2 79 120 IPR001841 -
Dod09g0299 153 ProSiteProfiles Zinc finger RING-type profile. 79 121 IPR001841 -
Dod09g0299 153 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 1 152 - -
Dod09g0299 153 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 46 126 IPR013083 -
Dod09g0299 153 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g0299 Dod-Chr9 4595864 4596325 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod09g0299 58 125 C3H Transcription Factor Family AT2G18670 45.588 8.61e-17 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g0299 - - gmx:102662620 186.808