Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g0297 ATGAAGAAAGGAAGCACAAGCAGCGAGTCTCCTAAACCTGACCGCAAAACCATTGAAAGGAACCGCAGAATTCACATGAAAACTCTTTGCTTCAAGCTTGCTTCTCTTATTCCTTCCAATCATAAATATTTCAAACAATATTCCAAATCCAAGGACATGCTGGCACAACAAGACCAGCTGGATCTGGCGGCAAGGTACATCAAGCATATGACAGAAAGAATAGAGAAATTGAAGAAGCAGAAGGAGCAAGCCATGATGGGGTCAAACCAAAGCCATAACAACAACAGCAATAAAATGATAAATTTCGACACCAAATTGCCACTGCTTGAGCTAAGAGACCTTGGTTCAGGCATAGAAGTGGTGTTGGTGAGTGGATTGAACAACAAGACCTTCATGTTGCACGAAGTGATTAGTGTCCTCGAGGAAGAAGGCGCTGAAGTTGTCACCGCAAGCTTCTCAACCGTGGGGGATAAGATTTTTTACGTTGTTCATGCTCAGGTTAAAATATCAAGAGTGGGTGTTGAGACCACAAGGGTACATCAGAGGCTCCAGGACTTGATTGCCCCTCTTGAAATCTGGGAGTACACATGA 591 0.4365 MKKGSTSSESPKPDRKTIERNRRIHMKTLCFKLASLIPSNHKYFKQYSKSKDMLAQQDQLDLAARYIKHMTERIEKLKKQKEQAMMGSNQSHNNNSNKMINFDTKLPLLELRDLGSGIEVVLVSGLNNKTFMLHEVISVLEEEGAEVVTASFSTVGDKIFYVVHAQVKISRVGVETTRVHQRLQDLIAPLEIWEYT* 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g0297 196 Coils Coil 60 87 - -
Dod09g0297 196 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 10 70 IPR011598 GO:0046983
Dod09g0297 196 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 16 88 IPR036638 GO:0046983
Dod09g0297 196 MobiDBLite consensus disorder prediction 1 21 - -
Dod09g0297 196 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 7 187 IPR015660 GO:0003700|GO:0006357
Dod09g0297 196 Gene3D - 11 100 IPR036638 GO:0046983
Dod09g0297 196 SMART finulus 16 76 IPR011598 GO:0046983
Dod09g0297 196 PANTHER TRANSCRIPTION FACTOR BHLH162 7 187 - -
Dod09g0297 196 Pfam Helix-loop-helix DNA-binding domain 16 70 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g0297 Dod-Chr9 4552021 4553816 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod09g0297 5 187 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 33.333 8.50e-24 91.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dod09g0297 HLH 5.5e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g0297 - - gmx:100811485 256.529
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g1630 05 41436358 41438009 Dod09g0297 09 4552021 4553816 PCT