Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g0294 ATGTCAATGGGGAAGTGGTTGGCACGAAGACAAGCACATTTGTTACGTGCCCAACAGGGTATCCCTATATCTGAGTATGGAGTTCTAGTTGAAATGATCCAGGTGCCTGATTGGGCATTTGAAGCTGCAGGTCAAGAATCAAGGGGCATGGCCCTTGATGCTGCTGCATATCAACCTGGACTTTACCTAACTCCAGCTCAGACAGAAGCAGTCAAAGCTTTAATCCAGGAACTACCAAGGTTCAGCCTAAATGCTGTTCCAACTGATTGCAATGAATGCCTCATCTGCTTAGAAGAGTTCTATGTCGGCAATGAGGTCCGAGGTTTGCCTTGCGCTCACAATTTTCATGTTGAATGCATTGATAAATGGCTTCAGTTGAATGTGAAATGTCCTCAGTGCCGTTGCTCAGTATTTCCAAATCTTGATCTTAGTGCTTTGTCCAATATCCGTTCTGGATCTGAACAGTCTTCTGACAGTGTTGGGACAACAACCAGATATGTGCGAATCCAACCTTCTAGTCAGAGTTACCTGTTGAGATTACAGGGACTCGTCCGCCCAGTACGTGCTGAAATTGCAGGGTCAGATGGTGAGACAAACAATGCTTTGGAAAATGCTGAAAATGGTGGTGTAACTGTTGTGACTCAAAATGCGTCTAACTTGTGA 663 0.4495 MSMGKWLARRQAHLLRAQQGIPISEYGVLVEMIQVPDWAFEAAGQESRGMALDAAAYQPGLYLTPAQTEAVKALIQELPRFSLNAVPTDCNECLICLEEFYVGNEVRGLPCAHNFHVECIDKWLQLNVKCPQCRCSVFPNLDLSALSNIRSGSEQSSDSVGTTTRYVRIQPSSQSYLLRLQGLVRPVRAEIAGSDGETNNALENAENGGVTVVTQNASNL* 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g0294 220 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 63 139 IPR013083 -
Dod09g0294 220 ProSiteProfiles Zinc finger RING-type profile. 93 134 IPR001841 -
Dod09g0294 220 SMART ring_2 93 133 IPR001841 -
Dod09g0294 220 CDD RING-H2_RNF111_like 92 136 - -
Dod09g0294 220 SUPERFAMILY RING/U-box 74 142 - -
Dod09g0294 220 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SIS3-LIKE ISOFORM X1 1 207 - -
Dod09g0294 220 Pfam Ring finger domain 91 134 IPR001841 -
Dod09g0294 220 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SIS3 1 207 IPR044793 GO:0004842|GO:0010182
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g0294 Dod-Chr9 4512913 4515060 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod09g0294 1 218 C3H Transcription Factor Family AT3G47990 67.873 8.20e-110 315
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g0294 K16284 - gmx:100812016 370.548
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g1627 05 41387824 41393457 Dod09g0294 09 4512913 4515060 PCT