Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g0269 ATGGATCTTCAGACAAAGCTCAGAGAAATGTATGCCTCACAGCCAATGCTTTCATCACAAGAAAACTATATGAAATCCAGCATGAAGGATATTGAGCTTCCTTTTGGGGTCCCTTCATCTCAGGGATTAATCTTGCAAGATTTTCACCATATGGATCAGTTTCATTTGAATGGTGGTTCCTTATCATCCAATCAAGTTTTTGGGGTCCAAAATCCAACCCTTGATCCCTTTGGCAATAACTTTACTACCTATGGGTCTTCATCATCATCATGTTTTGATATTTTTGAGTGCAAGCCTTTTGTGGAGAATAATATTGGTGGTGGCCATGCTCAAGTTATGGACAACTTCCAATATGGAGGTTATGGTTTGAGCCTCCCTCATCAGAGGAATCAATTGGATATGATGGTTTCAAGCCAAAGTTATCTTCCCTTTAATGCTCAAGAAACCAAGCCTGTGACTTTTGTTGTGCCAGATGAAGTCTCATGCATATCCCCAGTGAATTATTTCAAAAAGGTTGCCATCAACAAAATCAATAGGGATTATCCAACCTCTAGAAGGACATATAAAACTCGCAGGAAGTCCAATATTATAAAAGGGCAATGGACTGAGAGTGAAGATAGTTTGTTGATTCAACTGGTGGAACAATATGGATTGAAGAAATGGTCTAATATTGCTCAGATGCTACCTGGAAGAATAGGGAAACAATGCAGAGAGAGATGGCATAACCATCTAAGGCCTGACATTAAGAAGGACATATGGACCGAAGAAGAGGACAAGATACTGATCCAAGCTCATTCAGAGATAGGAAATAAGTGGGCAGAGATTGCTAAAAGATTGCCAGGAAGAACTGAGAACTCCATCAAAAACCATTGGAATGCAACAAAGAGAAGGCAATATTCCAAAAGGAAGTGCCGCACAAAGTACTCTAGAGGCTCTCTCCTTCAAGAGTACATCAAGAGCTTGAACTTGGACAAGAAACCCCCAATAGACTATAGAAGAAGATCTGTTAATCCTAGAGGCATGAGAAACAAAACTAGCACTAACACAAGCACAAACACAAGCAAAGTAGTAGAACCACTAACAACAGCAGCACAGCCCCATAAAGCAGATAATGATCAATTTGTTCCTAGTGATGATAGGTTGGTTCCACATTATGATTTCAATGAGGTCCCGGATTTTTGCTTTGATGAGAACTTGTTTGAAGAAGGGTGTAGCATTGATTCTTTGCTAGACGACATGCAATGTGTTCCTACTATGGATGAGAAAGAATTTGATGGAAAAAAGCAAGGTGATGCTACTAATAATGTGGGAGTGCCAAATTTTGATCTTGATGGGGGAATAATGCAATGTGCTCCTGTTGTTGATTTTGATGACAATGATTTTGACATGGATATGTCACAAGAGATTATGGAATCCATGCTTGATGCTGAAGTTAAGAAGGAGCTTGATTTGGTGGAGATGATGTCTCAGGTCAATAAAATTGATTGA 1488 0.3945 MDLQTKLREMYASQPMLSSQENYMKSSMKDIELPFGVPSSQGLILQDFHHMDQFHLNGGSLSSNQVFGVQNPTLDPFGNNFTTYGSSSSSCFDIFECKPFVENNIGGGHAQVMDNFQYGGYGLSLPHQRNQLDMMVSSQSYLPFNAQETKPVTFVVPDEVSCISPVNYFKKVAINKINRDYPTSRRTYKTRRKSNIIKGQWTESEDSLLIQLVEQYGLKKWSNIAQMLPGRIGKQCRERWHNHLRPDIKKDIWTEEEDKILIQAHSEIGNKWAEIAKRLPGRTENSIKNHWNATKRRQYSKRKCRTKYSRGSLLQEYIKSLNLDKKPPIDYRRRSVNPRGMRNKTSTNTSTNTSKVVEPLTTAAQPHKADNDQFVPSDDRLVPHYDFNEVPDFCFDENLFEEGCSIDSLLDDMQCVPTMDEKEFDGKKQGDATNNVGVPNFDLDGGIMQCAPVVDFDDNDFDMDMSQEIMESMLDAEVKKELDLVEMMSQVNKID* 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g0269 495 Pfam Myb-like DNA-binding domain 253 292 IPR001005 -
Dod09g0269 495 Pfam Myb-like DNA-binding domain 198 244 IPR001005 -
Dod09g0269 495 PANTHER MYB PROTEIN-RELATED 114 411 - -
Dod09g0269 495 PANTHER BNAC03G62830D PROTEIN 114 411 - -
Dod09g0269 495 CDD SANT 253 295 IPR001005 -
Dod09g0269 495 SMART sant 197 246 IPR001005 -
Dod09g0269 495 SMART sant 249 297 IPR001005 -
Dod09g0269 495 MobiDBLite consensus disorder prediction 340 354 - -
Dod09g0269 495 ProSiteProfiles Myb-like domain profile. 245 295 IPR001005 -
Dod09g0269 495 SUPERFAMILY Homeodomain-like 195 291 IPR009057 -
Dod09g0269 495 Gene3D - 252 315 - -
Dod09g0269 495 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 249 299 IPR017930 -
Dod09g0269 495 CDD SANT 201 244 IPR001005 -
Dod09g0269 495 Gene3D - 197 250 - -
Dod09g0269 495 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 193 248 IPR017930 -
Dod09g0269 495 ProSiteProfiles Myb-like domain profile. 193 244 IPR001005 -
Dod09g0269 495 MobiDBLite consensus disorder prediction 328 354 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g0269 Dod-Chr9 3986303 3988173 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod09g0269 84 413 MYB Transcription Factor Family AT4G18770 46.893 9.17e-93 287
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dod09g0269 Myb_DNA-binding 7.5e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g0269 K09422 - gmx:100816653 575.474
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g1606 05 41169468 41171379 Dod09g0269 09 3986303 3988173 PCT