Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g0261 ATGGAGAACCTGTATGGCTTCCACTATACAGATGATCACTGCTATTCAGAGGAGCAATCATCAATGGCTCCACCGCCATTACCGCCGTCGAGCAACAGCGTGGTTTCATCCATGGGGACACCAATATTAGTCCCTGTAGGCTCTTCTGCATCAGATAATGCTTTCTTGCAGCAGGAGCAGGAGCAAGATGATGAGGAGGAGGTTTCTAAAGTGCTTCGCGCTAAAGTTGCTTCTCATCCTCTTTTTCCTCAGCTCCTCAATAACTATATCGATTGCCATAAGGTGGGAGCACCGCCAGAGATGGCGCAACTATTGGATGAAATAAGAGAAGCGAATATTGGCTCATCATCTGCCTTCTTTGGTTCCGATCTTGAGCTTGACAATTTCATGGGAACGTATTGCAATTTGTTGGCCAAGTACAAATATGAACTTTTAAGGCCTTTCGAGGAGGCAACGATGTTCCTAAATGACATGGAAACGCAGCTTAACTCCATCATCTGCAACGGGCCTGCACTAATTGATGAAGTTACAACAGCTGGATCATCTGAAAAGGGTTTTATTACGGATGAGAAGGAGACAATCGAGTGCAAGAGGATAAATGAAGATCGAGAGCTGAAGGATAATCTTCTGCGTAGATATAGCGGCTACATTAGTACTCTGAAGAATGAATTTTCTAAAAACAAGAAGAAAGAAAGGCTACCGAATGAAGCAAAGGAAATCTTACTAGCATGGTGGAATATTAACTTCAAGTGGCCATACCCAACGGATGCGGATAAGGTTACCCTAGCTGAATGGACTGGTCTGGACCAGAAGCAGATCAACAATTGGTTTATAAACCAAAGGAAGCGCCATTGGAAATTACCATCGGATCAGGAAATGCAAGCTGCAGTTTTGGATGGTATATATGGACCTATCTGCATGAGTGAGAGTGAGGGAGTGAGTGAGTGA 948 0.4409 MENLYGFHYTDDHCYSEEQSSMAPPPLPPSSNSVVSSMGTPILVPVGSSASDNAFLQQEQEQDDEEEVSKVLRAKVASHPLFPQLLNNYIDCHKVGAPPEMAQLLDEIREANIGSSSAFFGSDLELDNFMGTYCNLLAKYKYELLRPFEEATMFLNDMETQLNSIICNGPALIDEVTTAGSSEKGFITDEKETIECKRINEDRELKDNLLRRYSGYISTLKNEFSKNKKKERLPNEAKEILLAWWNINFKWPYPTDADKVTLAEWTGLDQKQINNWFINQRKRHWKLPSDQEMQAAVLDGIYGPICMSESEGVSE* 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g0261 315 Pfam ELK domain 204 225 IPR005539 GO:0003677
Dod09g0261 315 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 6 54 308 - -
Dod09g0261 315 SMART KNOX1_2 70 114 IPR005540 GO:0003677|GO:0005634
Dod09g0261 315 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 54 308 - -
Dod09g0261 315 Pfam KNOX2 domain 121 165 IPR005541 GO:0003677|GO:0005634
Dod09g0261 315 SMART ELK_2 204 225 IPR005539 GO:0003677
Dod09g0261 315 MobiDBLite consensus disorder prediction 16 40 - -
Dod09g0261 315 Gene3D - 225 299 - -
Dod09g0261 315 ProSiteProfiles 'Homeobox' domain profile. 224 287 IPR001356 GO:0003677
Dod09g0261 315 Pfam KNOX1 domain 72 110 IPR005540 GO:0003677|GO:0005634
Dod09g0261 315 SMART KNOX2_2 116 168 IPR005541 GO:0003677|GO:0005634
Dod09g0261 315 SUPERFAMILY Homeodomain-like 226 296 IPR009057 -
Dod09g0261 315 ProSitePatterns 'Homeobox' domain signature. 262 285 IPR017970 GO:0000981|GO:0006355
Dod09g0261 315 Pfam Homeobox KN domain 244 283 IPR008422 GO:0003677|GO:0006355
Dod09g0261 315 SMART HOX_1 226 291 IPR001356 GO:0003677
Dod09g0261 315 CDD homeodomain 228 286 IPR001356 GO:0003677
Dod09g0261 315 ProSiteProfiles ELK domain profile. 204 224 IPR005539 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g0261 Dod-Chr9 3882801 3891033 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod09g0261 1 303 Homeobox Transcription Factor Family AT1G23380 45.946 4.13e-81 247
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Dod09g0261 KNOX2 3.5e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g0261 - - aprc:113874840 327.02