Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g0240 ATGGGTCGTCATTCCTGTTGTTTAAAGCAAAAACTTAGGAAAGGTTTATGGTCCCCTGAAGAAGATGAGAAGCTGTTCAATTACATAACCAGATTTGGTGTTGGCTGCTGGAGTTCAGTCCCCAAACAAGCTGGCCTGCAAAGGTGTGGAAAGAGTTGCAGATTGAGATGGATAAACTATTTGAGGCCTGATTTGAAGAGAGGAATGTTCTCCCAACAGGAGGAGGATCTTATAATCAGTCTTCATGAAGTTCTTGGGAATAGGTGGGCTCAAATTGCAGCACAGTTGCCAGGGAGAACAGATAATGAGATTAAGAACTTCTGGAATTCATGCTTAAAGAAGAAGCTAATGAAGCAAGGGATTGACCCAGCTACACACAAGCCCCTCCTCAGCACTGAAGCTGAAGCTCGCATGATGATGATAAAGGAAGAGAATGAAACCATAGAGACACCATCATCTGTGCTAATACCACTGTCTCATCATCAAGGGGTTTCAGCTGCATCAACGACAACCACCTTATTAGCCTCCTCAGCAGCACTTGTAATGAGTCATCATGACTCTGATTACTACAATGGAGTGTTAACAGTGGCAGAAGAAGAAGAAGAAGCATCAAGAGAATTTTTCATGAGCAATAAGCCTAATTCAGCATTGGACCCCTTGTCCTCCTACTTTGAATTCCAAATGGGTGGTACTGCTTCTCAAAATGGTTATTATAATGATTCAAGCCATTATCATCAAAGCCAGATAGGAACCAATTCAAGCTATGGATTCGCTTCAATGCCAAGCCTGAACAGTTCTGATCAAGGGAACATGTCGGTGGCAGAGTTTTCAGATAACAACTCAGCCTCAAAGATCAGTTCTTTGCTCATGAATAATAATAATGATCATCATCATGTGAATAAGGAGAGTTCCAGCAACAGCTCAACTACCATGAGTGTTTATCCAGCTGGTGGAGGGGTGTGCCAGATGAGTAGTGGAGGCATGATTAATGCAGTGCTCTCGTCATCATCATGGGACTGTGACAACAAGTTGGATCCTAGTTTGTTTCAGTTTCATGTCAATGCCATGAAGTCTGAAGGGTTCAAGACAAGTTCATCATCATGGCAAGAAGAGCAGTTCCAGCAGCAACACACTCACAATTCAATAGATTTCACTTGCTATAATTTAACGTCACTTTCAGAAGATCTAGCAGGAGCAAATTTTGATGTATTCCCCAGCAGATTTGAACTGTAA 1233 0.4217 MGRHSCCLKQKLRKGLWSPEEDEKLFNYITRFGVGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGMFSQQEEDLIISLHEVLGNRWAQIAAQLPGRTDNEIKNFWNSCLKKKLMKQGIDPATHKPLLSTEAEARMMMIKEENETIETPSSVLIPLSHHQGVSAASTTTTLLASSAALVMSHHDSDYYNGVLTVAEEEEEASREFFMSNKPNSALDPLSSYFEFQMGGTASQNGYYNDSSHYHQSQIGTNSSYGFASMPSLNSSDQGNMSVAEFSDNNSASKISSLLMNNNNDHHHVNKESSSNSSTTMSVYPAGGGVCQMSSGGMINAVLSSSSWDCDNKLDPSLFQFHVNAMKSEGFKTSSSSWQEEQFQQQHTHNSIDFTCYNLTSLSEDLAGANFDVFPSRFEL* 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g0240 410 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Dod09g0240 410 CDD SANT 70 109 IPR001005 -
Dod09g0240 410 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Dod09g0240 410 MobiDBLite consensus disorder prediction 291 310 - -
Dod09g0240 410 CDD SANT 17 61 IPR001005 -
Dod09g0240 410 Gene3D - 11 67 - -
Dod09g0240 410 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Dod09g0240 410 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Dod09g0240 410 SMART sant 66 114 IPR001005 -
Dod09g0240 410 SMART sant 13 63 IPR001005 -
Dod09g0240 410 PANTHER MYB TRANSCRIPTION FACTOR 1 403 - -
Dod09g0240 410 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Dod09g0240 410 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Dod09g0240 410 Gene3D - 69 142 - -
Dod09g0240 410 PANTHER MYB DOMAIN PROTEIN 55 1 403 - -
Dod09g0240 410 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g0240 Dod-Chr9 3566293 3568119 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod09g0240 1 134 MYB Transcription Factor Family AT4G01680 83.582 7.57e-82 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dod09g0240 Myb_DNA-binding 2.5e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g0240 K09422 - gmx:100799243 455.292
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g1576 05 40735900 40737687 Dod09g0240 09 3566293 3568119 PCT