LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dod09g0225	ATGCCGCAGGATTCCTCCGATCAAGACCTCGAAGAACCCGATTCCGAGTTCGTCGAGGTTGACCCCACCCGTCGCTATGGTCGGTACAAGGAAGTTTTAGGGAAGGGAGCTTTCAAGAAAGTATATCGAGGCTTTGATGAGTTGGAAGGAATTGAAGTGGCATGGAATCAGGTTAAGGTGGCAGATCTGCTCCGTAACTCGGAAGATTTGGAGCGCCTTTATTCCGAGGTTCATCTGCTCAAGACTTTGAAGCACAAGAATATAATTAAGTTCTACAATTCGTGGGTTGACACCAAGAATGAGAACATCAACTTCATTACTGAGATTTTCACCTCGGGGACATTACGCCAATACCGGAAGAAACATAAGCATGTGGATTTGAGAGCTTTGAAAAAATGGTCTAGGCAGATCTTGGAGGGCCTTTTGTATCTTCACAGTCATAATCCACCAGTTATTCATCGAGACCTTAAGTGTGACAACATTTTTGTCAATGGGAATCAAGGAGAGGTGAAAATCGGTGATTTAGGATTGGCAGCCATTCTTCAACAGGCCAATTCAGCTCACAGTGTTATAGGTACCCCAGAGTTCATGGCGCCAGAACTTTATGAGGAGGAGTATAATGAGCTTGTTGATATCTATGCTTTTGGCATGTGCTTACTAGAGTTGGTAACCTTTGAGTACCCATATGTTGAATGTAACAATGCTGCTCAAATATACAAGAAAGTGACATCTGGAATAAAGCCAGCATCATTGGCAAAAGTGGCAGATCTTGAAGTTAAGGCATTTATACAAAAGTGTATCGCTAATGTATCTGAACGGCTGCCTGCAAAAGAGCTCTTGATGGATCCCTTCCTTCAGCCAGATTATGATAGTGAAAGTGTAGGTCGTTCTTCAAGGTCTGAAACTCGTCATTCAGATGCAGGAAATAGTTCAAATAATCAACCAATTGGAAAAAGTATCGAGGATATTTCTGTTGAGACAAGTAGGGAATTCACAGTGGAAGGTCAGAGGAAAGATGTTAATACCATATTTATAAAATTGCGGATAGCAGACTCCTCAGGAGGCCATATTCGGAATATCCACTTCCCTTTCGATATTGGAGCAGACACTTCAATCTCTGTTGCTAGCGAAATGGTTGAGGAGTTGGAACTTACTGATCAAGATGTTACAACTATTGCTGAGATGATTGACTCAGAAATTCGATTTCTCCTTCCTGATTGGAATCCCAGTGAATCTCCTGCCAGTAATTTCTGTCAAGATTCAGCAGTTTCGGTTGGCAGTGCTGCTGAAACTAGGCTTGAGGCTTCCGCAAATGATCCAACCACTCCGACTGGCAGTCTAGCATTAGAAATACTACGTTCAGGTCGTAAGTACTGGTCAGATTCACCCAAGGGGGTTGGTGGAAACCCCCTATCAAGGCATGGTACTTCAAACTTGTCTCATGGAGGGGAAGTGAATACTAAGGAAGGAAGCGTGACTGCAAATGGTTCCATTTCAGACGAACTGGGGCCTCCTGAGCACATCTGTGTTGCTGATTACAGTACTGAGAAGGAACGTGGAGGGACTGCTGGTTCCCCTTCCGCTGAGAGAGGTGTTACATCTGGGCATTTGGTAGCAACCAGTGAAAAATCATCTCTGGAAGAAATATCCGGCAGCTTGAAAGATCCTGAAATAGATGTCAATAAAATAGCCGTCAAACTTGAGAATTTGTTGATGAGACAAAAAGAGGAGCTAGATGAACTAAAAAGGAAGCACAAATTAGCTGTCTCAGATCTTTTGAATGAACTTCCTCCAGAAATTTGCAAGAAAGTCCTAAATATTTGCAACCTGCAGATGCCCGATAGTGAAAATGTAGGGTGA	1860	0.4312	MPQDSSDQDLEEPDSEFVEVDPTRRYGRYKEVLGKGAFKKVYRGFDELEGIEVAWNQVKVADLLRNSEDLERLYSEVHLLKTLKHKNIIKFYNSWVDTKNENINFITEIFTSGTLRQYRKKHKHVDLRALKKWSRQILEGLLYLHSHNPPVIHRDLKCDNIFVNGNQGEVKIGDLGLAAILQQANSAHSVIGTPEFMAPELYEEEYNELVDIYAFGMCLLELVTFEYPYVECNNAAQIYKKVTSGIKPASLAKVADLEVKAFIQKCIANVSERLPAKELLMDPFLQPDYDSESVGRSSRSETRHSDAGNSSNNQPIGKSIEDISVETSREFTVEGQRKDVNTIFIKLRIADSSGGHIRNIHFPFDIGADTSISVASEMVEELELTDQDVTTIAEMIDSEIRFLLPDWNPSESPASNFCQDSAVSVGSAAETRLEASANDPTTPTGSLALEILRSGRKYWSDSPKGVGGNPLSRHGTSNLSHGGEVNTKEGSVTANGSISDELGPPEHICVADYSTEKERGGTAGSPSAERGVTSGHLVATSEKSSLEEISGSLKDPEIDVNKIAVKLENLLMRQKEELDELKRKHKLAVSDLLNELPPEICKKVLNICNLQMPDSENVG*	620

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dod09g0225	619	Coils	Coil	564	595	-	-
	Dod09g0225	619	Gene3D	Transferase(Phosphotransferase) domain 1	110	291	-	-
	Dod09g0225	619	MobiDBLite	consensus disorder prediction	471	498	-	-
	Dod09g0225	619	MobiDBLite	consensus disorder prediction	459	538	-	-
	Dod09g0225	619	MobiDBLite	consensus disorder prediction	304	319	-	-
	Dod09g0225	619	ProSiteProfiles	Protein kinase domain profile.	27	285	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Dod09g0225	619	MobiDBLite	consensus disorder prediction	290	319	-	-
	Dod09g0225	619	Pfam	Protein kinase domain	30	285	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Dod09g0225	619	CDD	STKc_WNK	25	285	-	-
	Dod09g0225	619	Pfam	Oxidative-stress-responsive kinase 1 C-terminal domain	358	400	IPR024678	GO:0004674\|GO:0005524
	Dod09g0225	619	PANTHER	SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED	6	614	-	-
	Dod09g0225	619	PANTHER	SERINE/THREONINE-PROTEIN KINASE-RELATED	6	614	-	-
	Dod09g0225	619	Gene3D	-	341	431	-	-
	Dod09g0225	619	Gene3D	Phosphorylase Kinase; domain 1	11	108	-	-
	Dod09g0225	619	SMART	serkin_6	27	285	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Dod09g0225	619	SUPERFAMILY	Protein kinase-like (PK-like)	29	286	IPR011009	-
	Dod09g0225	619	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	151	163	IPR008271	GO:0004672\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dod09g0225	Dod-Chr9	3390493	3394668	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dod09g0225	15	431	MAP Kinase Kinase Kinase	AT3G22420	52.371	3.76e-164	481

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	WNK_NRBP	Dod09g0225		Pkinase	4.9e-51	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Dod09g0225	K08867		-	gmx:100301899	842.032