Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g0209 ATGTCTATCACTGCCTTCAAATCCGTGACCACGATGGCAGAGTCCTGCCTCCTCTCTCCCCCTTCCTCACTCTTCCACTCCAAATCCACACCCAAACACCCCTTATTACCCAAACACAACAACTCCCTCATCCTCAAGCTCCAACAGCTCTCCTTCCCTTCCCTCAGAGCCCACCGCCCCCACGTGCTCACTCACGTGGCCCAAACCTCCGACTGGGCCCAACAAGAAGAAGACAACACCCTCACCTTACAACAACAACAACAACAAGAAGCTGCTCTCAGTGAAACAGAAGCTGGCCTTTCCGATTGGGAGCCCAACGGCGAAGCCCCAGAAGAAGAACAAGTTGCTGAAGAAGAAGGAGAAGGAGAAGGAGAAGGGGGTTTTGTGGAACCACCTGAGGATGCGAAAGTGTTTGTTGGGAACTTGCCTTTCGATGTTGATAGCCAAAAACTCGCCATGCTTTTCGAGCAGGCAGGAACCGTTGAGATTGCTGAGGTTATTTATAATAGGGAAACTGACCAGAGTCGCGGGTTTGGATTTGTGACGATGAGTACTGTTGAGGAAGCTGAGAAGGCCGTGGAGAAGCTCCACCGCTATGAACTAGATGGAAGACTATTGACTGTTAACAAGGCTTCTCCAAGAGGAACTCGGCCTGAACGCCCACCTCGTAACTTTGAACCTGCTTTAAGAGTCTATGTTGGTAACTTGCCATGGGATGTGGATGATACTCGTCTGGAGCAAATTTTCAGTGAACATGGTAAGGTTGTGAATGCTCGGGTAGTCTATGACAGAGAGACTGGACGATCACGTGGCTTTGGTTTTGTCACAATGTCTGATGAGACTGAAATGAATGATGCTATTGCTGCTCTTGATGGTCAGAGTTTGGACGGGAGGGCTATCAGAGTGAATGTTGCCGAGGATAGGCCCAGGCGAAGCTCTTATTGA 945 0.4984 MSITAFKSVTTMAESCLLSPPSSLFHSKSTPKHPLLPKHNNSLILKLQQLSFPSLRAHRPHVLTHVAQTSDWAQQEEDNTLTLQQQQQQEAALSETEAGLSDWEPNGEAPEEEQVAEEEGEGEGEGGFVEPPEDAKVFVGNLPFDVDSQKLAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSTVEEAEKAVEKLHRYELDGRLLTVNKASPRGTRPERPPRNFEPALRVYVGNLPWDVDDTRLEQIFSEHGKVVNARVVYDRETGRSRGFGFVTMSDETEMNDAIAALDGQSLDGRAIRVNVAEDRPRRSSY* 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g0209 314 CDD RRM_HP0827_like 230 306 - -
Dod09g0209 314 MobiDBLite consensus disorder prediction 106 128 - -
Dod09g0209 314 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 229 307 IPR000504 GO:0003723
Dod09g0209 314 PANTHER RIBONUCLEOPROTEIN 3 313 - -
Dod09g0209 314 SUPERFAMILY RNA-binding domain, RBD 221 312 IPR035979 GO:0003676
Dod09g0209 314 MobiDBLite consensus disorder prediction 74 95 - -
Dod09g0209 314 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 137 206 IPR000504 GO:0003723
Dod09g0209 314 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 231 301 IPR000504 GO:0003723
Dod09g0209 314 MobiDBLite consensus disorder prediction 74 132 - -
Dod09g0209 314 Gene3D - 219 313 IPR012677 -
Dod09g0209 314 Gene3D - 64 218 IPR012677 -
Dod09g0209 314 SMART rrm1_1 230 303 IPR000504 GO:0003723
Dod09g0209 314 SMART rrm1_1 136 209 IPR000504 GO:0003723
Dod09g0209 314 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 135 213 IPR000504 GO:0003723
Dod09g0209 314 CDD RRM_HP0827_like 136 213 - -
Dod09g0209 314 SUPERFAMILY RNA-binding domain, RBD 131 224 IPR035979 GO:0003676
Dod09g0209 314 PANTHER OS02G0815200 PROTEIN 3 313 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g0209 Dod-Chr9 2866582 2868942 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod09g0209 133 311 Eukaryotic Initiation Factors Gene Family AT3G16380 38.220 2.89e-26 106
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g0209 - - adu:107478884 409.068
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g1544 05 40367053 40370627 Dod09g0209 09 2866582 2868942 PCT