Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g0197 ATGATGACAAGAACTCCACCACTCTCTCTGCTTTTCTTGCTCTTCTCTCTTCTCACCCCAGCCCTCATTTCTTCTTCCCCTGTCAAAGACCCTGAATTGGTAGTACAAGAGGTGAACAGGAAAATCAATGAGTCTATAGCTAGAAGGAGCTTAGCTAGCAGGAGGAACTTGGGGTACCTCTCATGTGGTAGCGGGAACCCAATCGACGATTGCTGGAGGTGTGACCCGAATTGGGAGAACAACAGGCAAAGGCTAGCGGATTGCGCAATTGGGTTCGGGAAGAACGCAGTCGGAGGTAGGGACGGCAAGATCTACGTGGTGGACGACGCCGGCGACGACGATCCGGTGGACCCGAAGCCCGGTACTCTCCGGCACGCCGTGATCCAAGACGAGCCATTGTGGATCATATTCGCCAGGGACATGGTGATCAGATTGAAGGAGGAACTCCTAATGAACTCATACAAGACAATTGATGGTAGGGGTGCTAGCGTGCACATTTCGGGTGGTCCATGCATTACAATACAATACGTGACAAATGTTATCATACATGGGATTAACATACATGATTGTAAGCAAGGTGGGAATGCTATGGTGCGTGACTCCCCTAGTCACTACGGGTGGAGGACCGTATCCGACGGTGATGGGGTGTCGATCTTTGGAGGGAGCCACGTTTGGGTGGACCATTGCTCCTTGTCCAATTGCAACGATGGGTTGATTGATGCCATTCATGGGTCCACCGCTATCACCATCTCGAACAATTACATGACGCACCATGATAAGGTCATGTTGTTGGGTCACAGCGATTCCTACACCCAAGACAAGAACATGCAGGTCACTATAGCTTTCAACCACTTTGGTGAAGGCCTCGTTCAAAGGATGCCGAGGTGTAGGCTTGGGTATTTCCACGTGGTGAACAATGACTATACCCATTGGGAAATGTATGCCATCGGTGGAAGTGCTAACCCAACAATCAACAGCCAGGGCAACAGATTTGTTGCACCAGATGACAGATTCAGTAAAGAGGTGACAAAGCATGAGGATGCGCCAGAGGATGACTGGAAGAATTGGAATTGGAGGTCAGAAGGGGACTTGTTGGTGAATGGTGCATTTTTCACTGCATCGGGTGCTGGAGCCTCCTCTAGCTATGCAAGGGCTTCTAGCTTAAGTGCTAGACCATCTTCCTTGGTCGGTTCAATCACAGTAGGTGCTGGTGCACTTAGCTGCAAGAAAGGTTCTCCTTGCTGA 1245 0.5012 MMTRTPPLSLLFLLFSLLTPALISSSPVKDPELVVQEVNRKINESIARRSLASRRNLGYLSCGSGNPIDDCWRCDPNWENNRQRLADCAIGFGKNAVGGRDGKIYVVDDAGDDDPVDPKPGTLRHAVIQDEPLWIIFARDMVIRLKEELLMNSYKTIDGRGASVHISGGPCITIQYVTNVIIHGINIHDCKQGGNAMVRDSPSHYGWRTVSDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDSYTQDKNMQVTIAFNHFGEGLVQRMPRCRLGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFVAPDDRFSKEVTKHEDAPEDDWKNWNWRSEGDLLVNGAFFTASGAGASSSYARASSLSARPSSLVGSITVGAGALSCKKGSPC* 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g0197 414 Pfam Pectate lyase 150 331 IPR002022 -
Dod09g0197 414 SUPERFAMILY Pectin lyase-like 66 405 IPR011050 -
Dod09g0197 414 PANTHER PECTATE LYASE 11 411 - -
Dod09g0197 414 PANTHER PECTATE LYASE 18-RELATED 11 411 IPR045032 GO:0030570
Dod09g0197 414 PRINTS Pollen allergen Amb family signature 212 233 IPR018082 -
Dod09g0197 414 PRINTS Pollen allergen Amb family signature 314 333 IPR018082 -
Dod09g0197 414 PRINTS Pollen allergen Amb family signature 88 105 IPR018082 -
Dod09g0197 414 PRINTS Pollen allergen Amb family signature 112 137 IPR018082 -
Dod09g0197 414 PRINTS Pollen allergen Amb family signature 292 311 IPR018082 -
Dod09g0197 414 PRINTS Pollen allergen Amb family signature 385 408 IPR018082 -
Dod09g0197 414 PRINTS Pollen allergen Amb family signature 148 164 IPR018082 -
Dod09g0197 414 PRINTS Pollen allergen Amb family signature 356 380 IPR018082 -
Dod09g0197 414 SMART amb_all 140 337 IPR002022 -
Dod09g0197 414 Gene3D - 65 407 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g0197 Dod-Chr9 2737889 2741193 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod09g0197 2 414 Polysaccharide Lyase AT5G63180 80.529 0.0 681
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g0197 K01728 - gmx:100814679 726.472
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g1536 05 40277350 40280008 Dod09g0197 09 2737889 2741193 PCT