Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g0196 ATGGATGTGCCGCGGCATTCGGCTGATGTTCCTATTTCTAAAACTCTTGTAGCATTGAGGAGAGTGAGGTCATTGAGGGATCCATCAACTAATTCTATGAGCAAACTCTCTTCTTTAATTGATCATGTGCACTGGGAAAACGGTTCTGGTAATGGGATTTCTCTGCGGTTTTTGGATGCTGCTCCTGCATGTGACTTTAATGATAGTGATGGCACTTTAAGATCAAAGGATTTAGGTGCTGTGGGGCAAAGGGAGCAGGATTCTGCTGATTTTGCATTCAATTGTGGCTTGCTGAATTCTAGGGTGAAGCCTAGTGGGGTCTCATGTCATGAAGGCCAACCTTATGATCACCCATCTTGCTCGGATCCGCAGCAGCGAGGCATTTCTGGAGATAAATCACCAAGTGAAAGCTGTTGTGGGGACCAAGGGGATGGGGGAAAAGCATTGGATTTGGCTTTTAACATGCATCCTAGTAATCATTTCAATGAAGGGGAGTCACGCTATGTAGCGAGTACTAGATCATCTCAATTAGGGAGAATTGATCACTCTAAGTCAGCCAAAAAATCCCTGCGCAAAAATCAGGTAAAACCATCTGAATTTGTGGGCGGTATTGTTAGCCATTTAGGCAGTCCATGCCTTTCTGTCCACAATGCTTTCTCATCCCATAGTTCCTCAATGCATATACCTCATGGTGATGATGTTTTAGATGATAATGATAATGGATGTGGAATAAGCTGTTGTTGGTCCAAATCACCAAGGTTTAGAGAATCAAATCGTTATTGTGAAATAGGCGATGGTCCCTTGACATTGCACCATGTTGGTGAGACTGATCTTCATGGACATAGAAGCATGACACATATTAGTGGTGAAATTAGTCCAAATATGGAAACTCCTAGAAACCTATCTCTGAAATTCAGGCCGAAATCATTTAGTGATTTGGTGGGACAAAATGTGGTAGTAAGGTCTCTTCTTGGAGCTATCTTCACAGGAAGGATAACATCGTTTTATATCTTCCATGGTCCGCGTGGTACAGGCAAAACATCTGCCTCTAGGATATTTGCTGCTGCACTGAATTGCCTCGCTGTTGGGGAGCAAAAGCCATGTGGCATGTGTAGAGAATGTGTTTTATTCTTTTCTGGAAGAAGTAAAGATGTTAAAGAAGTGGATTCTATAAAAATCAATCGTTCAGACCAGGTTAAAACCCTTCTTAAGAAAGCATGCTTCCCTCCAGTTTCTTCACGATTTAAGGTTTTCATTATCGATGAGTGTCAGTTGTTGAATGGGGAGACATGGGCAAGTCTTGTGAATGGCCTAGAGAACCTTTCTCAGCATGTTGTTTTTGTGATGATCACCCCCGATTTGGATAAGCTTCCTCGAAGTGCAGTTTCCCGGGCTCAGAGGCATCACTTTCCGAAGATTAAAGATGCTGACATTGCAAGCAGATTAGAAAAGATTTGTGCTGAGGAAGGTATAGATGTTGAACAGGCTGCTTTAGACTTTATTGCTGTGAAATCCTGTGGTTCTGTAAGGGATGCGGAAATGATGCTTGATCAGCTGAGTTTGCTTGGTAAAAAGATCACAATTTCCTTGGCTTATGAGCTTACTGGGATAGTCTCTGATGACGAACTGCTTGATTTGCTGGATCTGGCTTTGTCATCCGACACTTCAAACACAGTTATAAGAGCTCGGGAGCTGATGAGATCAAGGATAGACCCTTTGCAACTTATATCACAGCTGGCAAATCTGATTATGGACATCCTTGCAGGGAAATGTGAAGACAATGTCTCTGAAGTCAGAAGTAGGTTTTCAAGCAGATATACTTCGGAAGTGGACCTTCAGAAACTAAATCATGCATTGAAAATTCTTTCTGAAACTGAGAAGCAGTTAAGAGTTTCAAAGAATCAAACAACATGGTTCACTGTGGCTCTCCTACAGTTAAGCTCTGTAGATCATCCATCCGTGGATGCAAATACTACCAAGTTGTGTTTGAGAGGAGCATGCAATGGAGATGGTGATTGCTGCAGTACATCATCCACAGGGCAGAGCTTGAAGCATCTTTCTACAGCTCAGTGTGATAAGAAGTCATACACATTAGGCGTACATGAGGACCACAAAAGAACCTTGGATTCCATATGGTATAAAGCTACAGAGTTGTGTCAGTCTAGTCTATTCAAAAATTTTCTCAGGAAGCATGGGACCTTGTCTGCACTTCATGTTAACTGCAGCCCTTCATGTCTTGCTATTGCCGACTTGGAGTTCCACCATCACCACCACGTATCTAAGGCCGAGAGGTCATGGAAATTGATTGCAAGTTCCTTGCAGTTCATATTGGGTTGTAACATTGAGTTGAGGATCAACTATGTACCTTGTGCTTCAGATTCCAAGTATGCCAAATTGAAGAGGCCATCCTTCAGCTTCTTTAGCTGTACGCGCAGAATTCAACAAAAATTGTTTTCGCCTAATGAACAAGGAAGTGAACCAGACTATGCTGATTACACCTCTGAAAAGCTCATGATGATGGACAAAACTCAGGCTTCTTCCCGTGATTGTGGATCTTTGGTGCCACCACTTGTGTCTTACCATGGAGTGGGGGTGGTAACAACATTGAGAAGCAGTGAAGGGAATCTACTGAGCTCAGGAAAAAGATTTCTGGATAGGTCATGCCAAGAGATGATGCTAGGGACATCATCTTGTGCTCATCTAATTCCATCAACCTTGGATTCAGACAATCAGTCCAAGTGTTTTCCTCAAACTCTCTGGCTTAAAAAGAAGTCCAGTTCTTCATTTTCTTTCAAGTTGACTATTTAG 2808 0.4249 MDVPRHSADVPISKTLVALRRVRSLRDPSTNSMSKLSSLIDHVHWENGSGNGISLRFLDAAPACDFNDSDGTLRSKDLGAVGQREQDSADFAFNCGLLNSRVKPSGVSCHEGQPYDHPSCSDPQQRGISGDKSPSESCCGDQGDGGKALDLAFNMHPSNHFNEGESRYVASTRSSQLGRIDHSKSAKKSLRKNQVKPSEFVGGIVSHLGSPCLSVHNAFSSHSSSMHIPHGDDVLDDNDNGCGISCCWSKSPRFRESNRYCEIGDGPLTLHHVGETDLHGHRSMTHISGEISPNMETPRNLSLKFRPKSFSDLVGQNVVVRSLLGAIFTGRITSFYIFHGPRGTGKTSASRIFAAALNCLAVGEQKPCGMCRECVLFFSGRSKDVKEVDSIKINRSDQVKTLLKKACFPPVSSRFKVFIIDECQLLNGETWASLVNGLENLSQHVVFVMITPDLDKLPRSAVSRAQRHHFPKIKDADIASRLEKICAEEGIDVEQAALDFIAVKSCGSVRDAEMMLDQLSLLGKKITISLAYELTGIVSDDELLDLLDLALSSDTSNTVIRARELMRSRIDPLQLISQLANLIMDILAGKCEDNVSEVRSRFSSRYTSEVDLQKLNHALKILSETEKQLRVSKNQTTWFTVALLQLSSVDHPSVDANTTKLCLRGACNGDGDCCSTSSTGQSLKHLSTAQCDKKSYTLGVHEDHKRTLDSIWYKATELCQSSLFKNFLRKHGTLSALHVNCSPSCLAIADLEFHHHHHVSKAERSWKLIASSLQFILGCNIELRINYVPCASDSKYAKLKRPSFSFFSCTRRIQQKLFSPNEQGSEPDYADYTSEKLMMMDKTQASSRDCGSLVPPLVSYHGVGVVTTLRSSEGNLLSSGKRFLDRSCQEMMLGTSSCAHLIPSTLDSDNQSKCFPQTLWLKKKSSSSFSFKLTI* 936
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g0196 935 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 300 522 IPR027417 -
Dod09g0196 935 SMART AAA_5 332 475 IPR003593 -
Dod09g0196 935 CDD HLD_clamp_pol_III_gamma_tau 473 536 IPR045085 -
Dod09g0196 935 SUPERFAMILY post-AAA+ oligomerization domain-like 537 647 IPR008921 GO:0003677|GO:0006260
Dod09g0196 935 MobiDBLite consensus disorder prediction 106 143 - -
Dod09g0196 935 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 110 892 - -
Dod09g0196 935 MobiDBLite consensus disorder prediction 118 136 - -
Dod09g0196 935 Gene3D - 537 650 - -
Dod09g0196 935 Gene3D - 474 536 - -
Dod09g0196 935 PANTHER DNA POLYMERASE III SUBUNIT GAMMA/TAU 110 892 - -
Dod09g0196 935 Pfam DNA polymerase III, delta subunit 316 473 - -
Dod09g0196 935 TIGRFAM dnaX_nterm: DNA polymerase III, subunit gamma and tau 300 646 IPR012763 GO:0003887|GO:0005524|GO:0006260|GO:0009360
Dod09g0196 935 CDD AAA 314 468 - -
Dod09g0196 935 Gene3D - 293 471 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g0196 Dod-Chr9 2712047 2716528 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod09g0196 291 585 Core DNA Replication Machinery Family AT1G21690 22.517 5.90e-12 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g0196 - - gmx:100819111 1235.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g1535 05 40244430 40250756 Dod09g0196 09 2712047 2716528 PCT