Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g0190 ATGGCGGAGCCACCGAACGGCGACGTATTCCCGTGGCTGAAGTCGCTGCCGGTGGCGCCGGAGTACCGGCCAACGCTGGCGGAGTTCCAAGATCCGATCGCGTACATTTTCAAGATCGAGAAGGAGGCTTCCAAGTACGGCATCTGCAAGATCATTCCCCCGTTCCCTCCACCGCCGAAGAAGGCCGCAATCTCAAACCTCACCCGCTCCCTCTCGGCCCGGCCCGATTCCAGGCCCACATTCACCACCCGACAGCAGCAGATCGGGTTCTGCCCCCGTCGGCCCAGGCCCGTCCAGCGGCCCGTCTGGCAGAGCGGCGACAACTACACCTTCCAGGAATTCGAGGCCAAAGCCAAGTCCTTCGAGCGCAGCTACCTTAAGAAACATCTTCACCGGAAGGGAGGAGGAGGAGGAGGGGCTACCGGTGGGGCCGGTACCCTCTCGGCGCTGGAATCTGAGACTCTGTTCTGGAAGGCCACCGTTGACAGGCCGTTCTCGGTTGAGTACGCTAACGACATGCCGGGGTCGGCGTTCGCCCGGAAATGCAGGGAGAACGGTGGTGGTGCGGTGGCGGCGGTGCTGGCGGAGTCGGCGTGGAACATGAGGGAGGTTTCGAGGGCGAATGGCTCGTTGTTGAGGTTCATGAAGGAGGAGATTCCGGGGGTTACTTCGCCGATGGTGTATGTGGCTATGTTGTTTAGCTGGTTCGCTTGGCATGTTGAGGACCATGACTTGCATAGCTTGAATTACCTTCATATGGGAGCGGGGAAGACTTGGTACGGTGTGCCGAGGGATGCTGCCGTGGCGTTCGAGGAGGTGGTTAGGGTTCATGGTTATGGCGGAGAGATAAACCCTCTTGTTACTTTTGCTACTCTTGGTGAGAAAACCACAGTGATGTCACCTGAAGTATTGATTAGCGCAGGTGTTCCATGCTGCAGGTTAGTTCAAAATGCTGGGGAATTTGTTGTAACGTTTCCAAGAGCTTATCACTCAGGGTTTAGTCATGGTTTCAATTGTGGAGAAGCAGCTAACATTGCGACACCTGAATGGTTGAGAGTTGCTAAAGATGCTGCTATTCGCAGGGCTTCAATAAATTATCCTCCCATGGTTTCACATTTCCAGTTACTTTATGACCTTGCTTTAGCTTTGTGTTCTAGAATTCCTGAAGGTATCAGTGCTGAACCACGGAGTTCTCGTCTTAAAGATAAGAAGAGGGGTGAAGGAGAAACTGTAATTAAAGAACTATTTGTTCGAGATGTGTTACAGAACAATGATTTGCTTCATTTACTCAGCAAAGGATCTGCTGTAGTACTTCTTCCTCATAGCTCATTTGACATTTCTTTTTGCTCAAAATTACGTATTGGATCTCAACAACTAAAAGTAAACCCTGAGTTTTCTCTTGGTGCATGCAATTCTGCTGGAATGAATTCCTCAAAAGATTTTATTTCTGATCTGGTGTTCCACAGGAACCATGGAATCAAGCAAGAAAATGGTTTCTGTTCTGTGAAAAACAAGTTTACTTCATTGTATCAAAGGAACAGGATTTCCTCATTTGATGTAAATGGTAACATATGTACTTCAAGTTCTAAACCACTGCAAAGTGACACTGAAGGAGAAACTGGTGAAGGGGATGGATCATCAGATCAGAGACTATTTTCATGTGTCACATGTGGAATATTAAGCTTTTCTTGTGTTGCTATTGTACAGCCTAGAGAACCTGCTGCTAGATATCTTATGTCAGCTGATTGTAGCTTCTTTAATGATTGGGTTGTTGGTTCAGGAGTATCTGACAAAAAATTTTCCGGGTGGACGGAAAAGAAGACCCCAAATGGTTTATATGATGATTTTGTTCAATCTGCTCGATTCCGGCTACAGACTGCAGAACGAAATTATGAGGAGGCCTTAAATACTGACAGAGACAAAGGCAATACAGCTCTTTCATTGCTGGCCTCAGCATATGGAAATTCTTCTGACTCTGAGGAAGATCAGGGTGACCCAGATATTGCAGTTAATGGTCGTGAATCAAGACTTAATAGGGGAGATGGTTTCAGTCATCAATCTATTGACTACTCTTTTGAGAAAGAGGCTTATGAAACCAGTTCAGGTATTGCATTTAAAAATACAAGGGCAATGCCTAATTCCACCACTAGTTGTTCCCAAGATGTTCATGATGGTGAAAAGTTGTTGGTCAAGCCTATGGTTCCCATTGATAATAAAAATGCTTCATTGGTGCCACAATGTGATGAAGACTCTTCTAGAATGCATGTCTTCTGTCTGGAGCATGCTGCAGAAGCAGAGCAGCAACTTCGCCCAATAGGTGGAGCCCACATATTGCTCCTGTGTCATCCAGATTATCCCAAGATAGAGGCTGATGCAAAGCTTGTAGCAGAAGATCTGGGGATGGATTACGAGTGGAAGAAAATTGCATACAGGCATGCCACCAAGGAGGATGAGGAAAGGATCCAGTTAGCCTTGGATAGTGAGGAAGCTATTCCTGGGAATGGGGACTGGGCTGTAAAGCTAGGAATCAATCTTTTTTATAGTGCAAACCTCAGCCGTTCTCCTCTTTATAGTAAGCAGATGCCTTACAATTCGGTTATATATAATGCATTTGGCTGTACCTCTCCAGCAAGTTCACCCATAGAACCGAAGGTCTATCAGAGAAGGGCCAACAGGCAGAAAAAGGTGGTTGCTGGGAAATGGTGTGGTAAAGTTTGGATGTCCAATCAGGTCCATCCCCTTTTGTCAAAAAGAGATTCTGAAGATGTTGAAGATGAGAGAAGCTTACATGGGTTGGTATTACCTGATGAGAAAATTGAGAGATCAGAAAGCATCCCTAAAAGCGAAACTAATATCAGAAAATTTGTTAGGAAAAGAAAAATGACTGTAGAGAGTGGAAGAGCCAGGAAAGGCATTCTTGTTGAAAAAGATGTGGTTTCAGATAATTCAACTGAGGGCAAACCAAATCAACAGCCAAGGAGGATTCTTAGAAGTAAGCAAGGCAGGCATATTGAGACAGATGGTGCAGCTTTGGAAGGGGATTATTCTCCTCCCTATCATCATAGAAAACCTGTTAGCAAGAAAACAAATTGCACTGGAAGTGACTCAGTTTCTGACAATTCTGTTGATGATAACTATCTTAGGCGATATAAGAGGAATGTTCATTTGAAAGAAGCTAAGTTTATTGACAATGGTGTCGTGTCAGATGATACAACGGAGTATGATTCTGATTGGAAGCAGATGGGAGAACTTAGCAGCAAGCTAGTTGAAGACATCGACAGAGATGCAAATTCAGAGGATTCAGAGGATTCATCGGATGTTGGTTCTGTTCAATTGCTTAGGAAGACTCCCAAAAGCAAGCATGCCAAATACATTGGTGAAGATGTAATTTCCGATGACCAAATGGAGGATGATTGTCATAAGCAGCAGAGGAGGATTCCAAAAGGCAGGCAATGCAAACACCTTGCTAAAAAAGATATAAAGGCATCTGATGGCCATCTGGAGCAGCACATGCGGATGCAGCAACGAAGGAATCCTAAAAGCAGGCGAGCCAAAAACCTTGCTGGGGAGGATGCTGTATCAGATGACCAACTGGAGGGTCACCATCGCAAGTATAGAAAGACTCCTAAAGGCAGGCTGGCCAAATATGTAGCAGGGGAAGATGTAATGTCTGATGACCAATTGGAGGATCACTTTCAGAAGCAGCAAAAATGTTTTCCTAGAAGGCGGCAAAACAAAGGCATTGATGATGAAGTTAAAGATGCATTGTCTGATGACCAATTAGAGGACCATTTTCAGAAGCGGCAAATGAGTCTTTCTAGGAAAAGGCGAAACAAAGGCAATGAAAGAGCAGTTAAAGATGTAATGTCTGACGACCAACTGGAGGATCACTTTCAGAAGCAGCAGAGGACTTTTCCTAGGAGCAGGCAAAACAAACCCATTGATAGAGAAGTCATGGATGACTCAGTAGACAATAATTCTCATCTTCCACATAAAACTCCTAGAAGAAAGCAGGCTAAATGCAAGGATGAAGATGACAGAAATTCAGATGATGAAGTGGAGGATGATTCTCTCCAACAGCACAAGAAAATTCTTCGAAGTAAGCAATCTAAACCAAAGAAACTTAAACAGTTAAAACAAGCTAACCTTCTCCAAGTGAAAAACCAGACATCCCTGCCTGTAAAACGAGGTGGTCAGACACTAATGAAATCAAAAGCTCCTCAGAAAAATAAGCAGTCTCTTAACATGGGGAATAAGCAATCTGGTAACTCCAGAGATTTCAGTTTGAATACTGAAGAGGAGGAAGAAGGTGGACCTAGCACACGGCTTAGGAAGAGAGCCCCTAAAGTTGAAGAGTCTGAAGGAAAATCAAAAAGAAAGCAAACCAAAAGGAAAAAGGCGAAGAATGCTACAGCTGCAAAGGTTTCAGCCAAAGTGAAGGATGAGGAAAAAGAATACCAGTGTGACATTGAGGGGTGCACCATGAGTTTTGGGACAAAACAAGAACTGTCACATCATAAGAGAAATATCTGTCCTGTAAAAGGGTGTGGGAAGAAGTTTTTCTCACACAAATATCTGGTGCAGCACCGGCGAGTTCATGAGGATGACCGCCCCCTGAAATGCCCTTGGAAAGGGTGCAAGATGACTTTCAAGTGGGCTTGGGCTCGTACCGAACATATTCGAGTCCACACCGGTGAGCGACCGTATGTATGTGCCGAGCCAGGCTGTGGGCAAACATTCAGATTTGTGTCTGATTTCAGTCGTCATAAGCGAAAGACAGGGCATACAGCAAAAAGGAGTCGTTAA 4806 0.4511 MAEPPNGDVFPWLKSLPVAPEYRPTLAEFQDPIAYIFKIEKEASKYGICKIIPPFPPPPKKAAISNLTRSLSARPDSRPTFTTRQQQIGFCPRRPRPVQRPVWQSGDNYTFQEFEAKAKSFERSYLKKHLHRKGGGGGGATGGAGTLSALESETLFWKATVDRPFSVEYANDMPGSAFARKCRENGGGAVAAVLAESAWNMREVSRANGSLLRFMKEEIPGVTSPMVYVAMLFSWFAWHVEDHDLHSLNYLHMGAGKTWYGVPRDAAVAFEEVVRVHGYGGEINPLVTFATLGEKTTVMSPEVLISAGVPCCRLVQNAGEFVVTFPRAYHSGFSHGFNCGEAANIATPEWLRVAKDAAIRRASINYPPMVSHFQLLYDLALALCSRIPEGISAEPRSSRLKDKKRGEGETVIKELFVRDVLQNNDLLHLLSKGSAVVLLPHSSFDISFCSKLRIGSQQLKVNPEFSLGACNSAGMNSSKDFISDLVFHRNHGIKQENGFCSVKNKFTSLYQRNRISSFDVNGNICTSSSKPLQSDTEGETGEGDGSSDQRLFSCVTCGILSFSCVAIVQPREPAARYLMSADCSFFNDWVVGSGVSDKKFSGWTEKKTPNGLYDDFVQSARFRLQTAERNYEEALNTDRDKGNTALSLLASAYGNSSDSEEDQGDPDIAVNGRESRLNRGDGFSHQSIDYSFEKEAYETSSGIAFKNTRAMPNSTTSCSQDVHDGEKLLVKPMVPIDNKNASLVPQCDEDSSRMHVFCLEHAAEAEQQLRPIGGAHILLLCHPDYPKIEADAKLVAEDLGMDYEWKKIAYRHATKEDEERIQLALDSEEAIPGNGDWAVKLGINLFYSANLSRSPLYSKQMPYNSVIYNAFGCTSPASSPIEPKVYQRRANRQKKVVAGKWCGKVWMSNQVHPLLSKRDSEDVEDERSLHGLVLPDEKIERSESIPKSETNIRKFVRKRKMTVESGRARKGILVEKDVVSDNSTEGKPNQQPRRILRSKQGRHIETDGAALEGDYSPPYHHRKPVSKKTNCTGSDSVSDNSVDDNYLRRYKRNVHLKEAKFIDNGVVSDDTTEYDSDWKQMGELSSKLVEDIDRDANSEDSEDSSDVGSVQLLRKTPKSKHAKYIGEDVISDDQMEDDCHKQQRRIPKGRQCKHLAKKDIKASDGHLEQHMRMQQRRNPKSRRAKNLAGEDAVSDDQLEGHHRKYRKTPKGRLAKYVAGEDVMSDDQLEDHFQKQQKCFPRRRQNKGIDDEVKDALSDDQLEDHFQKRQMSLSRKRRNKGNERAVKDVMSDDQLEDHFQKQQRTFPRSRQNKPIDREVMDDSVDNNSHLPHKTPRRKQAKCKDEDDRNSDDEVEDDSLQQHKKILRSKQSKPKKLKQLKQANLLQVKNQTSLPVKRGGQTLMKSKAPQKNKQSLNMGNKQSGNSRDFSLNTEEEEEGGPSTRLRKRAPKVEESEGKSKRKQTKRKKAKNATAAKVSAKVKDEEKEYQCDIEGCTMSFGTKQELSHHKRNICPVKGCGKKFFSHKYLVQHRRVHEDDRPLKCPWKGCKMTFKWAWARTEHIRVHTGERPYVCAEPGCGQTFRFVSDFSRHKRKTGHTAKRSR* 1602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g0190 1601 SMART JmjN_1 18 59 IPR003349 -
Dod09g0190 1601 Gene3D Classic Zinc Finger 1455 1509 - -
Dod09g0190 1601 MobiDBLite consensus disorder prediction 1160 1175 - -
Dod09g0190 1601 ProSiteProfiles Zinc finger C2H2 type domain profile. 1569 1600 IPR013087 -
Dod09g0190 1601 PANTHER LYSINE-SPECIFIC DEMETHYLASE REF6 7 1592 - -
Dod09g0190 1601 ProSiteProfiles Zinc finger C2H2 type domain profile. 1539 1568 IPR013087 -
Dod09g0190 1601 Coils Coil 617 637 - -
Dod09g0190 1601 ProSiteProfiles JmjN domain profile. 19 60 IPR003349 -
Dod09g0190 1601 MobiDBLite consensus disorder prediction 1160 1210 - -
Dod09g0190 1601 MobiDBLite consensus disorder prediction 1254 1347 - -
Dod09g0190 1601 SUPERFAMILY beta-beta-alpha zinc fingers 1549 1592 IPR036236 -
Dod09g0190 1601 ProSitePatterns Zinc finger C2H2 type domain signature. 1571 1595 IPR013087 -
Dod09g0190 1601 Gene3D Classic Zinc Finger 1510 1593 - -
Dod09g0190 1601 MobiDBLite consensus disorder prediction 1428 1458 - -
Dod09g0190 1601 ProSiteProfiles Zinc finger C2H2 type domain profile. 1509 1538 IPR013087 -
Dod09g0190 1601 MobiDBLite consensus disorder prediction 1254 1476 - -
Dod09g0190 1601 SMART cupin_9 193 362 IPR003347 -
Dod09g0190 1601 Gene3D Cupin 12 366 - -
Dod09g0190 1601 PANTHER LYSINE-SPECIFIC DEMETHYLASE 7 1592 - -
Dod09g0190 1601 ProSitePatterns Zinc finger C2H2 type domain signature. 1511 1533 IPR013087 -
Dod09g0190 1601 Pfam JmjC domain, hydroxylase 226 344 IPR003347 -
Dod09g0190 1601 ProSiteProfiles JmjC domain profile. 193 362 IPR003347 -
Dod09g0190 1601 MobiDBLite consensus disorder prediction 1381 1427 - -
Dod09g0190 1601 SUPERFAMILY beta-beta-alpha zinc fingers 1509 1545 IPR036236 -
Dod09g0190 1601 Pfam jmjN domain 20 53 IPR003349 -
Dod09g0190 1601 MobiDBLite consensus disorder prediction 1094 1120 - -
Dod09g0190 1601 MobiDBLite consensus disorder prediction 653 682 - -
Dod09g0190 1601 ProSitePatterns Zinc finger C2H2 type domain signature. 1541 1563 IPR013087 -
Dod09g0190 1601 MobiDBLite consensus disorder prediction 666 680 - -
Dod09g0190 1601 SMART c2h2final6 1486 1508 IPR013087 -
Dod09g0190 1601 SMART c2h2final6 1539 1563 IPR013087 -
Dod09g0190 1601 SMART c2h2final6 1509 1533 IPR013087 -
Dod09g0190 1601 SMART c2h2final6 1569 1595 IPR013087 -
Dod09g0190 1601 MobiDBLite consensus disorder prediction 979 1042 - -
Dod09g0190 1601 MobiDBLite consensus disorder prediction 529 548 - -
Dod09g0190 1601 MobiDBLite consensus disorder prediction 1183 1203 - -
Dod09g0190 1601 SUPERFAMILY Clavaminate synthase-like 170 376 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g0190 Dod-Chr9 2659394 2668627 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod09g0190 1155 1600 C2H2 Transcription Factor Family AT3G48430 34.861 2.67e-67 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Dod09g0190 JmjC 1.1e-36 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g0190 - - gmx:100775271 2146.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod09g0190 09 2659394 2668627 Dod05g1531 05 40213855 40222922 PCT