Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g0189 ATGGAACCCTCTGAATCAGAATCAGAACCAGTTGGTTCCTCAACCACCACCACCACCACCACCATCATCAAAGACCCACAATTGGATTCTCAGTGCGAACCTTCTTCTTCACTTCATGTTCCCAATCATGATCAGGATCCTCCTAAACCCTCAGAATCAGATCCCAATGACAAGTTGGATTTGAGGGATGGGGATGATGATGATGAAACACATGAACTTGGTGGTGAATTCCATGACAAGTTGGATTTGAAAGGTGAGGAGGGTGAAGAGGGGTTTGGTGGTGAAAATGAGAAGAAAGATTCAAACTTTGAAGCTGGTAGTGGGGAATTGGGAGGTGAAGGTGGTGCCCCAGAATCTGGTGAGGGTCAAGGGAGTGATGATGATTGGAATTGTGATGAGGGGTATGGTTGGAATGAGAACGTGAAAGAGAGTGAGGTTGATAAGGTGAGTGGAGATGATGATGATGATGATGATGATAATGATGATGATAATGGAGTGGAAGAAGGTGGTGAAGTGGAGAAGAAGGAAGGCAGAAGCAGTGCTAGAGCTCAGCAGTACCCATTGAGGCCTGAAGCTGAAGACTGTGCATTTTATCTGAAGACTGGGTCTTGCAAGTTCGGATTCAATTGCAAGTTTAATCACCCAGTTAGGAGGAAAAACCAGGCTGTTAAAGAGAAGGTCGGTGAAAGAGAAGAACCAGCGGAAAGATCAAGCCAGATAGAATGCAAGTATTATTTAAGGTCTGGGGGTTGTAAGTTTGGAAAAGCCTGTAAATTTAATCACACTAGAGTAAAATACTCAGCGGCCCCTTTCGAGCTTAACTTTCTTGGCCTGCCTGTTCGTTTGGGAGAGAAAGAGTGTCCCTATTACATGCGCACTGGCTCTTGTAAGTTTGGAGCAAATTGCAAGTTTAATCATCCTGATCCTACATCTGTTGGAGGAGGAAGTGATTCTCCTTTAGGATATGGTAATGGCAGTTCTGTTTCATCACAAGGAATATCACAATCATCTGTACCCACGTGGTCTTCTTCAAGAACATTAAATGGAACTGCTCCTTTTGTGCCAATGATGCTTTCACCTACTCAAGCAGTTTCTCCCCAAAGTTCTGATTGGAATGGATATCAGGCACCTGTGTATCTATCTGAGAGAAGTATGCATCCACCTTCTGCATTTGTCATGAACAACCCAGCGATCGAAACAAGTGTTTATATGCACAACCAAAAGCAGATGCCAGTTGAAGGGTTTCCAGAGAGGCCTGGTGAACCTGAGTGCAGTTACTTCTTAAAAACTGGGGATTGCAAGTTCAAATCTAATTGTAAATTCCACCATCCAAAGAATCGGATTGCAAGATTACCTCCGTGCAACCTAAGTGACAAGGGTCTGCCTTTGAGACCTGACCAGAATGTATGCACACATTACAGCCGGTATGGAATTTGCAAATTTGGACCATCTTGTAAGTATGACCACCCAATAAACCCATCATCCTCAACTCTTCCTGAACTTGATCAGCAAACATCTTACACAAACTCAGCTACTGTTGAGGCGGCCGGGATGGGTGGAAGTGCAGGTGCTGATGATATGACGATTCAGCAGCCTGTGTAA 1602 0.4432 MEPSESESEPVGSSTTTTTTTIIKDPQLDSQCEPSSSLHVPNHDQDPPKPSESDPNDKLDLRDGDDDDETHELGGEFHDKLDLKGEEGEEGFGGENEKKDSNFEAGSGELGGEGGAPESGEGQGSDDDWNCDEGYGWNENVKESEVDKVSGDDDDDDDDNDDDNGVEEGGEVEKKEGRSSARAQQYPLRPEAEDCAFYLKTGSCKFGFNCKFNHPVRRKNQAVKEKVGEREEPAERSSQIECKYYLRSGGCKFGKACKFNHTRVKYSAAPFELNFLGLPVRLGEKECPYYMRTGSCKFGANCKFNHPDPTSVGGGSDSPLGYGNGSSVSSQGISQSSVPTWSSSRTLNGTAPFVPMMLSPTQAVSPQSSDWNGYQAPVYLSERSMHPPSAFVMNNPAIETSVYMHNQKQMPVEGFPERPGEPECSYFLKTGDCKFKSNCKFHHPKNRIARLPPCNLSDKGLPLRPDQNVCTHYSRYGICKFGPSCKYDHPINPSSSTLPELDQQTSYTNSATVEAAGMGGSAGADDMTIQQPV* 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g0189 533 SUPERFAMILY CCCH zinc finger 462 490 IPR036855 GO:0046872
Dod09g0189 533 PANTHER PROTEIN PHOSPHATASE RELATED 26 533 - -
Dod09g0189 533 MobiDBLite consensus disorder prediction 313 341 - -
Dod09g0189 533 MobiDBLite consensus disorder prediction 1 185 - -
Dod09g0189 533 MobiDBLite consensus disorder prediction 7 42 - -
Dod09g0189 533 ProSiteProfiles Zinc finger C3H1-type profile. 418 446 IPR000571 GO:0046872
Dod09g0189 533 SUPERFAMILY CCCH zinc finger 240 263 IPR036855 GO:0046872
Dod09g0189 533 Gene3D - 462 513 - -
Dod09g0189 533 ProSiteProfiles Zinc finger C3H1-type profile. 464 492 IPR000571 GO:0046872
Dod09g0189 533 MobiDBLite consensus disorder prediction 45 60 - -
Dod09g0189 533 MobiDBLite consensus disorder prediction 71 104 - -
Dod09g0189 533 SUPERFAMILY CCCH zinc finger 282 308 IPR036855 GO:0046872
Dod09g0189 533 Gene3D - 165 226 - -
Dod09g0189 533 SMART c3hfinal6 464 491 IPR000571 GO:0046872
Dod09g0189 533 SMART c3hfinal6 418 445 IPR000571 GO:0046872
Dod09g0189 533 SMART c3hfinal6 189 216 IPR000571 GO:0046872
Dod09g0189 533 SMART c3hfinal6 236 263 IPR000571 GO:0046872
Dod09g0189 533 SMART c3hfinal6 281 308 IPR000571 GO:0046872
Dod09g0189 533 SUPERFAMILY CCCH zinc finger 423 447 IPR036855 GO:0046872
Dod09g0189 533 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 26 533 - -
Dod09g0189 533 SUPERFAMILY CCCH zinc finger 188 217 IPR036855 GO:0046872
Dod09g0189 533 MobiDBLite consensus disorder prediction 149 167 - -
Dod09g0189 533 Gene3D - 231 314 - -
Dod09g0189 533 Gene3D - 386 457 - -
Dod09g0189 533 ProSiteProfiles Zinc finger C3H1-type profile. 281 309 IPR000571 GO:0046872
Dod09g0189 533 ProSiteProfiles Zinc finger C3H1-type profile. 189 217 IPR000571 GO:0046872
Dod09g0189 533 MobiDBLite consensus disorder prediction 320 341 - -
Dod09g0189 533 ProSiteProfiles Zinc finger C3H1-type profile. 236 264 IPR000571 GO:0046872
Dod09g0189 533 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 284 307 IPR000571 GO:0046872
Dod09g0189 533 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 241 261 IPR000571 GO:0046872
Dod09g0189 533 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 193 215 IPR000571 GO:0046872
Dod09g0189 533 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 467 490 IPR000571 GO:0046872
Dod09g0189 533 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 420 445 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g0189 Dod-Chr9 2651248 2656415 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod09g0189 404 492 C2H2 Transcription Factor Family AT3G02830 40.449 4.67e-17 81.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Dod09g0189 zf-CCCH 5.7e-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g0189 - - gmx:100786894 612.838
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g1530 05 40203054 40207471 Dod09g0189 09 2651248 2656415 PCT